Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgn3Q9DCB1 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgn3Q9DCB1 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgn3Q9DCB1 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC17.83■□□□□ 0.45
Hmgn3Q9DCB1 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Hmgn3Q9DCB1 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Hmgn3Q9DCB1 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgn3Q9DCB1 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgn3Q9DCB1 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgn3Q9DCB1 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC17.83■□□□□ 0.44
Hmgn3Q9DCB1 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Hmgn3Q9DCB1 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgn3Q9DCB1 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgn3Q9DCB1 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Hmgn3Q9DCB1 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgn3Q9DCB1 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgn3Q9DCB1 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Hmgn3Q9DCB1 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgn3Q9DCB1 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgn3Q9DCB1 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgn3Q9DCB1 Gm43213-201ENSMUST00000151866 1790 ntBASIC17.81■□□□□ 0.44
Hmgn3Q9DCB1 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgn3Q9DCB1 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Gm10571-201ENSMUST00000097869 1638 ntBASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgn3Q9DCB1 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Fst-202ENSMUST00000223640 2612 ntBASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgn3Q9DCB1 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Hmgn3Q9DCB1 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgn3Q9DCB1 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgn3Q9DCB1 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgn3Q9DCB1 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgn3Q9DCB1 Gm10399-202ENSMUST00000202768 748 ntBASIC17.77■□□□□ 0.44
Hmgn3Q9DCB1 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgn3Q9DCB1 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgn3Q9DCB1 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgn3Q9DCB1 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Hmgn3Q9DCB1 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Hmgn3Q9DCB1 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Hmgn3Q9DCB1 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Hmgn3Q9DCB1 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Hmgn3Q9DCB1 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms