Protein–RNA interactions for Protein: Q91Y11

Pcdha9, Protocadherin alpha-9, mousemouse

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha9Q91Y11 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha9Q91Y11 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.2■□□□□ 0.82
Pcdha9Q91Y11 Gm18671-201ENSMUST00000214826 683 ntBASIC20.2■□□□□ 0.82
Pcdha9Q91Y11 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Pcdha9Q91Y11 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha9Q91Y11 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha9Q91Y11 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha9Q91Y11 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Pcdha9Q91Y11 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha9Q91Y11 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha9Q91Y11 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha9Q91Y11 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 Gm13534-201ENSMUST00000121169 513 ntBASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.17■□□□□ 0.82
Pcdha9Q91Y11 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha9Q91Y11 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Pcdha9Q91Y11 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Pcdha9Q91Y11 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha9Q91Y11 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha9Q91Y11 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha9Q91Y11 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha9Q91Y11 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha9Q91Y11 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha9Q91Y11 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha9Q91Y11 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha9Q91Y11 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha9Q91Y11 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha9Q91Y11 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.15■□□□□ 0.82
Pcdha9Q91Y11 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha9Q91Y11 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Pcdha9Q91Y11 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha9Q91Y11 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha9Q91Y11 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Pcdha9Q91Y11 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdha9Q91Y11 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdha9Q91Y11 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdha9Q91Y11 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdha9Q91Y11 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdha9Q91Y11 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha9Q91Y11 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha9Q91Y11 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha9Q91Y11 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha9Q91Y11 AV356131-201ENSMUST00000206201 750 ntBASIC20.13■□□□□ 0.81
Pcdha9Q91Y11 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha9Q91Y11 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha9Q91Y11 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha9Q91Y11 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Gm10849-201ENSMUST00000100397 618 ntBASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha9Q91Y11 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms