Protein–RNA interactions for Protein: Q8R1F9

Rpp40, Ribonuclease P protein subunit p40, mousemouse

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpp40Q8R1F9 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rpp40Q8R1F9 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rpp40Q8R1F9 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rpp40Q8R1F9 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rpp40Q8R1F9 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rpp40Q8R1F9 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rpp40Q8R1F9 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rpp40Q8R1F9 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Rpp40Q8R1F9 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.37■□□□□ 0.85
Rpp40Q8R1F9 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rpp40Q8R1F9 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rpp40Q8R1F9 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rpp40Q8R1F9 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Rpp40Q8R1F9 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rpp40Q8R1F9 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
Rpp40Q8R1F9 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rpp40Q8R1F9 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Rpp40Q8R1F9 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Rpp40Q8R1F9 Notumos-201ENSMUST00000151998 2659 ntBASIC20.35■□□□□ 0.85
Rpp40Q8R1F9 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Rpp40Q8R1F9 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC20.35■□□□□ 0.85
Rpp40Q8R1F9 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rpp40Q8R1F9 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.35■□□□□ 0.85
Rpp40Q8R1F9 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rpp40Q8R1F9 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rpp40Q8R1F9 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Rpp40Q8R1F9 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rpp40Q8R1F9 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rpp40Q8R1F9 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rpp40Q8R1F9 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rpp40Q8R1F9 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rpp40Q8R1F9 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Rpp40Q8R1F9 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Rpp40Q8R1F9 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.33■□□□□ 0.85
Rpp40Q8R1F9 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.33■□□□□ 0.85
Rpp40Q8R1F9 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.33■□□□□ 0.84
Rpp40Q8R1F9 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.33■□□□□ 0.84
Rpp40Q8R1F9 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Rpp40Q8R1F9 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rpp40Q8R1F9 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rpp40Q8R1F9 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rpp40Q8R1F9 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rpp40Q8R1F9 Gm42555-201ENSMUST00000199304 1039 ntBASIC20.32■□□□□ 0.84
Rpp40Q8R1F9 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.32■□□□□ 0.84
Rpp40Q8R1F9 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rpp40Q8R1F9 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Rpp40Q8R1F9 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rpp40Q8R1F9 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rpp40Q8R1F9 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Gm29257-201ENSMUST00000186115 639 ntBASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rpp40Q8R1F9 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rpp40Q8R1F9 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rpp40Q8R1F9 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Rpp40Q8R1F9 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.29■□□□□ 0.84
Rpp40Q8R1F9 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.29■□□□□ 0.84
Rpp40Q8R1F9 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.29■□□□□ 0.84
Rpp40Q8R1F9 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms