Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trav8d-2Q5R1B6 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 AC121577.1-201ENSMUST00000227302 707 ntBASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav8d-2Q5R1B6 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.6■□□□□ 0.57
Trav8d-2Q5R1B6 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trav8d-2Q5R1B6 Gm32051-202ENSMUST00000197905 2385 ntBASIC18.6■□□□□ 0.57
Trav8d-2Q5R1B6 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC18.6■□□□□ 0.57
Trav8d-2Q5R1B6 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.6■□□□□ 0.57
Trav8d-2Q5R1B6 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.6■□□□□ 0.57
Trav8d-2Q5R1B6 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav8d-2Q5R1B6 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav8d-2Q5R1B6 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav8d-2Q5R1B6 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Trav8d-2Q5R1B6 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav8d-2Q5R1B6 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav8d-2Q5R1B6 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav8d-2Q5R1B6 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.58■□□□□ 0.56
Trav8d-2Q5R1B6 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Trav8d-2Q5R1B6 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.58■□□□□ 0.56
Trav8d-2Q5R1B6 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav8d-2Q5R1B6 Gm9987-201ENSMUST00000069768 567 ntBASIC18.58■□□□□ 0.56
Trav8d-2Q5R1B6 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav8d-2Q5R1B6 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.58■□□□□ 0.56
Trav8d-2Q5R1B6 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trav8d-2Q5R1B6 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-2Q5R1B6 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-2Q5R1B6 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-2Q5R1B6 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-2Q5R1B6 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-2Q5R1B6 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-2Q5R1B6 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trav8d-2Q5R1B6 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav8d-2Q5R1B6 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
Trav8d-2Q5R1B6 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Trav8d-2Q5R1B6 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Trav8d-2Q5R1B6 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC18.56■□□□□ 0.56
Trav8d-2Q5R1B6 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Trav8d-2Q5R1B6 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav8d-2Q5R1B6 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav8d-2Q5R1B6 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav8d-2Q5R1B6 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
Trav8d-2Q5R1B6 Gm10167-201ENSMUST00000150411 1479 ntBASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms