Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm13234-201ENSMUST00000120010 747 ntBASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 Gm8495-201ENSMUST00000188740 694 ntBASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 Gm42642-201ENSMUST00000200683 355 ntBASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Upf3bQ3ULL6 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.27■□□□□ 0.83
Upf3bQ3ULL6 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
Upf3bQ3ULL6 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.27■□□□□ 0.83
Upf3bQ3ULL6 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.27■□□□□ 0.83
Upf3bQ3ULL6 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Upf3bQ3ULL6 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Upf3bQ3ULL6 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Upf3bQ3ULL6 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.25■□□□□ 0.83
Upf3bQ3ULL6 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Upf3bQ3ULL6 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Upf3bQ3ULL6 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.24■□□□□ 0.83
Upf3bQ3ULL6 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf3bQ3ULL6 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf3bQ3ULL6 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Upf3bQ3ULL6 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf3bQ3ULL6 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf3bQ3ULL6 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Upf3bQ3ULL6 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.23■□□□□ 0.83
Upf3bQ3ULL6 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3bQ3ULL6 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3bQ3ULL6 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3bQ3ULL6 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3bQ3ULL6 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3bQ3ULL6 Gm18671-201ENSMUST00000214826 683 ntBASIC20.22■□□□□ 0.83
Upf3bQ3ULL6 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3bQ3ULL6 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3bQ3ULL6 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3bQ3ULL6 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Upf3bQ3ULL6 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Upf3bQ3ULL6 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.2■□□□□ 0.82
Upf3bQ3ULL6 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.2■□□□□ 0.82
Upf3bQ3ULL6 Gm10033-202ENSMUST00000211874 928 ntBASIC20.2■□□□□ 0.82
Upf3bQ3ULL6 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.2■□□□□ 0.82
Upf3bQ3ULL6 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.2■□□□□ 0.82
Upf3bQ3ULL6 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Gm13146-201ENSMUST00000118508 780 ntBASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Upf3bQ3ULL6 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms