Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Hmgb3O54879 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Hmgb3O54879 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Hmgb3O54879 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
Hmgb3O54879 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Gm20100-201ENSMUST00000209418 2272 ntBASIC15.74■□□□□ 0.11
Hmgb3O54879 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Hmgb3O54879 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Hmgb3O54879 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC15.74■□□□□ 0.11
Hmgb3O54879 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Hmgb3O54879 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
Hmgb3O54879 AC126028.2-201ENSMUST00000228100 1833 ntBASIC15.73■□□□□ 0.11
Hmgb3O54879 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Hmgb3O54879 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC15.73■□□□□ 0.11
Hmgb3O54879 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Hmgb3O54879 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
Hmgb3O54879 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
Hmgb3O54879 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
Hmgb3O54879 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Hmgb3O54879 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
Hmgb3O54879 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Hmgb3O54879 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Hmgb3O54879 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Hmgb3O54879 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Hmgb3O54879 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
Hmgb3O54879 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC15.72■□□□□ 0.11
Hmgb3O54879 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC15.72■□□□□ 0.11
Hmgb3O54879 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC15.71■□□□□ 0.11
Hmgb3O54879 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Hmgb3O54879 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC15.71■□□□□ 0.11
Hmgb3O54879 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC15.71■□□□□ 0.11
Hmgb3O54879 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Hmgb3O54879 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC15.71■□□□□ 0.11
Hmgb3O54879 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Hmgb3O54879 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Hmgb3O54879 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Hmgb3O54879 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb3O54879 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb3O54879 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb3O54879 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb3O54879 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb3O54879 Gm5067-201ENSMUST00000170449 1009 ntBASIC15.7■□□□□ 0.1
Hmgb3O54879 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC15.7■□□□□ 0.1
Hmgb3O54879 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb3O54879 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb3O54879 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb3O54879 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb3O54879 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Hmgb3O54879 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb3O54879 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
Hmgb3O54879 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb3O54879 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb3O54879 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Hmgb3O54879 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms