Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Col6a3E9PWQ3 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Odf3b-204ENSMUST00000227834 930 ntBASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 AC132104.2-201ENSMUST00000215011 266 ntBASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col6a3E9PWQ3 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col6a3E9PWQ3 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC19.27■□□□□ 0.68
Col6a3E9PWQ3 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col6a3E9PWQ3 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col6a3E9PWQ3 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
Col6a3E9PWQ3 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Col6a3E9PWQ3 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col6a3E9PWQ3 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col6a3E9PWQ3 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
Col6a3E9PWQ3 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
Col6a3E9PWQ3 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col6a3E9PWQ3 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.27■□□□□ 0.67
Col6a3E9PWQ3 Gm6190-201ENSMUST00000220683 1374 ntBASIC19.27■□□□□ 0.67
Col6a3E9PWQ3 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col6a3E9PWQ3 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col6a3E9PWQ3 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.26■□□□□ 0.67
Col6a3E9PWQ3 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC19.26■□□□□ 0.67
Col6a3E9PWQ3 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col6a3E9PWQ3 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col6a3E9PWQ3 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col6a3E9PWQ3 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col6a3E9PWQ3 Gm37935-201ENSMUST00000192012 982 ntBASIC19.26■□□□□ 0.67
Col6a3E9PWQ3 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC19.26■□□□□ 0.67
Col6a3E9PWQ3 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.26■□□□□ 0.67
Col6a3E9PWQ3 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.25■□□□□ 0.67
Col6a3E9PWQ3 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
Col6a3E9PWQ3 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Col6a3E9PWQ3 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.25■□□□□ 0.67
Col6a3E9PWQ3 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col6a3E9PWQ3 Mzt1-203ENSMUST00000227948 952 ntBASIC19.25■□□□□ 0.67
Col6a3E9PWQ3 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col6a3E9PWQ3 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col6a3E9PWQ3 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Col6a3E9PWQ3 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.24■□□□□ 0.67
Col6a3E9PWQ3 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC19.24■□□□□ 0.67
Col6a3E9PWQ3 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col6a3E9PWQ3 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col6a3E9PWQ3 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col6a3E9PWQ3 Gm5712-201ENSMUST00000199748 1043 ntBASIC19.24■□□□□ 0.67
Col6a3E9PWQ3 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a3E9PWQ3 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a3E9PWQ3 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC19.23■□□□□ 0.67
Col6a3E9PWQ3 Gm8587-201ENSMUST00000076538 843 ntBASIC19.23■□□□□ 0.67
Col6a3E9PWQ3 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a3E9PWQ3 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a3E9PWQ3 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a3E9PWQ3 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a3E9PWQ3 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a3E9PWQ3 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col6a3E9PWQ3 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col6a3E9PWQ3 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Col6a3E9PWQ3 Gm43073-201ENSMUST00000198200 1189 ntBASIC19.22■□□□□ 0.67
Col6a3E9PWQ3 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
Col6a3E9PWQ3 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col6a3E9PWQ3 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col6a3E9PWQ3 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC19.22■□□□□ 0.67
Col6a3E9PWQ3 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col6a3E9PWQ3 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col6a3E9PWQ3 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Col6a3E9PWQ3 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col6a3E9PWQ3 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.21■□□□□ 0.67
Col6a3E9PWQ3 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col6a3E9PWQ3 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
Col6a3E9PWQ3 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col6a3E9PWQ3 Gm17807-201ENSMUST00000186869 298 ntBASIC19.21■□□□□ 0.67
Col6a3E9PWQ3 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col6a3E9PWQ3 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col6a3E9PWQ3 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Col6a3E9PWQ3 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 AC164629.2-201ENSMUST00000217916 270 ntBASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col6a3E9PWQ3 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms