Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm10033-202ENSMUST00000211874 928 ntBASIC19.27■□□□□ 0.68
Six4Q61321 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.27■□□□□ 0.68
Six4Q61321 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Six4Q61321 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Six4Q61321 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
Six4Q61321 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC19.26■□□□□ 0.67
Six4Q61321 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Six4Q61321 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.26■□□□□ 0.67
Six4Q61321 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Six4Q61321 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.26■□□□□ 0.67
Six4Q61321 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Six4Q61321 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC19.26■□□□□ 0.67
Six4Q61321 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Six4Q61321 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Six4Q61321 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Six4Q61321 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Six4Q61321 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Six4Q61321 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Six4Q61321 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six4Q61321 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
Six4Q61321 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six4Q61321 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Six4Q61321 Gm13146-201ENSMUST00000118508 780 ntBASIC19.25■□□□□ 0.67
Six4Q61321 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Six4Q61321 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Six4Q61321 Gm26571-201ENSMUST00000181399 666 ntBASIC19.25■□□□□ 0.67
Six4Q61321 Gm8495-201ENSMUST00000188740 694 ntBASIC19.25■□□□□ 0.67
Six4Q61321 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC19.25■□□□□ 0.67
Six4Q61321 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six4Q61321 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six4Q61321 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Six4Q61321 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
Six4Q61321 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.24■□□□□ 0.67
Six4Q61321 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.24■□□□□ 0.67
Six4Q61321 Gm42778-201ENSMUST00000199644 553 ntBASIC19.24■□□□□ 0.67
Six4Q61321 Gm42642-201ENSMUST00000200683 355 ntBASIC19.24■□□□□ 0.67
Six4Q61321 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC19.24■□□□□ 0.67
Six4Q61321 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Six4Q61321 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Six4Q61321 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Six4Q61321 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Six4Q61321 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Six4Q61321 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Six4Q61321 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Six4Q61321 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Six4Q61321 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Six4Q61321 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Six4Q61321 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Six4Q61321 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Six4Q61321 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Six4Q61321 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.21■□□□□ 0.67
Six4Q61321 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
Six4Q61321 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Six4Q61321 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Six4Q61321 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Six4Q61321 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Six4Q61321 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Six4Q61321 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Six4Q61321 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Six4Q61321 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Six4Q61321 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.2■□□□□ 0.66
Six4Q61321 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Six4Q61321 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Six4Q61321 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Six4Q61321 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Six4Q61321 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.2■□□□□ 0.66
Six4Q61321 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Six4Q61321 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Six4Q61321 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.2■□□□□ 0.66
Six4Q61321 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Six4Q61321 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Six4Q61321 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Six4Q61321 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Six4Q61321 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Six4Q61321 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Six4Q61321 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.19■□□□□ 0.66
Six4Q61321 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms