Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Trav5d-4Q5R1F6 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Trav5d-4Q5R1F6 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trav5d-4Q5R1F6 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trav5d-4Q5R1F6 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trav5d-4Q5R1F6 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trav5d-4Q5R1F6 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 AC137127.1-201ENSMUST00000213466 1078 ntBASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trav5d-4Q5R1F6 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav5d-4Q5R1F6 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Gm18688-201ENSMUST00000204695 1859 ntBASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 AC126028.2-201ENSMUST00000228100 1833 ntBASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav5d-4Q5R1F6 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav5d-4Q5R1F6 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trav5d-4Q5R1F6 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav5d-4Q5R1F6 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC16.3■□□□□ 0.2
Trav5d-4Q5R1F6 Gm43017-201ENSMUST00000198296 752 ntBASIC16.3■□□□□ 0.2
Trav5d-4Q5R1F6 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
Trav5d-4Q5R1F6 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trav5d-4Q5R1F6 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trav5d-4Q5R1F6 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC16.3■□□□□ 0.2
Trav5d-4Q5R1F6 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Gm5784-201ENSMUST00000179344 2478 ntBASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav5d-4Q5R1F6 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav5d-4Q5R1F6 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms