Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col28a1Q2UY11 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.41■□□□□ 0.54
Col28a1Q2UY11 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col28a1Q2UY11 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col28a1Q2UY11 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Col28a1Q2UY11 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Col28a1Q2UY11 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col28a1Q2UY11 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col28a1Q2UY11 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col28a1Q2UY11 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col28a1Q2UY11 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col28a1Q2UY11 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.39■□□□□ 0.53
Col28a1Q2UY11 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col28a1Q2UY11 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col28a1Q2UY11 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col28a1Q2UY11 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC18.38■□□□□ 0.53
Col28a1Q2UY11 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Gm8495-201ENSMUST00000188740 694 ntBASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Col28a1Q2UY11 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col28a1Q2UY11 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Col28a1Q2UY11 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Grk6-206ENSMUST00000224995 2971 ntBASIC18.35■□□□□ 0.53
Col28a1Q2UY11 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms