Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.18■□□□□ 0.5
Sox3P53784 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Sox3P53784 Ap3s1-204ENSMUST00000225520 957 ntBASIC18.18■□□□□ 0.5
Sox3P53784 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Sox3P53784 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox3P53784 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Sox3P53784 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox3P53784 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox3P53784 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox3P53784 Reep4-203ENSMUST00000226563 1444 ntBASIC18.17■□□□□ 0.5
Sox3P53784 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Sox3P53784 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC18.17■□□□□ 0.5
Sox3P53784 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Sox3P53784 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.16■□□□□ 0.5
Sox3P53784 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sox3P53784 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.16■□□□□ 0.5
Sox3P53784 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Sox3P53784 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sox3P53784 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Sox3P53784 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.16■□□□□ 0.5
Sox3P53784 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Sox3P53784 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox3P53784 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.15■□□□□ 0.5
Sox3P53784 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Sox3P53784 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.15■□□□□ 0.5
Sox3P53784 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox3P53784 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.15■□□□□ 0.5
Sox3P53784 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.15■□□□□ 0.5
Sox3P53784 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC18.15■□□□□ 0.5
Sox3P53784 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox3P53784 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox3P53784 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox3P53784 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox3P53784 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sox3P53784 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Sox3P53784 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.15■□□□□ 0.5
Sox3P53784 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.5
Sox3P53784 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Sox3P53784 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC18.14■□□□□ 0.49
Sox3P53784 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Sox3P53784 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sox3P53784 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Sox3P53784 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sox3P53784 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Sox3P53784 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sox3P53784 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Sox3P53784 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sox3P53784 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Sox3P53784 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox3P53784 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox3P53784 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox3P53784 Gm13168-201ENSMUST00000121771 632 ntBASIC18.13■□□□□ 0.49
Sox3P53784 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Sox3P53784 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox3P53784 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox3P53784 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox3P53784 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Sox3P53784 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sox3P53784 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox3P53784 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox3P53784 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Sox3P53784 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC18.12■□□□□ 0.49
Sox3P53784 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Sox3P53784 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.12■□□□□ 0.49
Sox3P53784 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox3P53784 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox3P53784 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox3P53784 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox3P53784 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox3P53784 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sox3P53784 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Sox3P53784 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Sox3P53784 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC18.11■□□□□ 0.49
Sox3P53784 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Sox3P53784 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC18.11■□□□□ 0.49
Sox3P53784 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
Sox3P53784 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sox3P53784 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sox3P53784 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sox3P53784 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sox3P53784 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sox3P53784 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sox3P53784 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Sox3P53784 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Sox3P53784 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sox3P53784 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sox3P53784 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sox3P53784 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sox3P53784 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms