Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Usp4P35123 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp4P35123 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp4P35123 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
Usp4P35123 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.9■□□□□ 0.78
Usp4P35123 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC19.9■□□□□ 0.78
Usp4P35123 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Usp4P35123 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp4P35123 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp4P35123 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC19.9■□□□□ 0.78
Usp4P35123 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp4P35123 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Usp4P35123 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp4P35123 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Usp4P35123 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp4P35123 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp4P35123 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp4P35123 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC19.89■□□□□ 0.77
Usp4P35123 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp4P35123 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp4P35123 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp4P35123 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Usp4P35123 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Usp4P35123 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp4P35123 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp4P35123 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp4P35123 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Usp4P35123 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.88■□□□□ 0.77
Usp4P35123 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.88■□□□□ 0.77
Usp4P35123 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp4P35123 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp4P35123 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC19.88■□□□□ 0.77
Usp4P35123 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp4P35123 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp4P35123 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp4P35123 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.88■□□□□ 0.77
Usp4P35123 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp4P35123 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp4P35123 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp4P35123 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC19.87■□□□□ 0.77
Usp4P35123 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC19.87■□□□□ 0.77
Usp4P35123 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp4P35123 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Usp4P35123 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp4P35123 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC19.86■□□□□ 0.77
Usp4P35123 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp4P35123 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Usp4P35123 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.86■□□□□ 0.77
Usp4P35123 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.86■□□□□ 0.77
Usp4P35123 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.86■□□□□ 0.77
Usp4P35123 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC19.86■□□□□ 0.77
Usp4P35123 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Usp4P35123 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp4P35123 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp4P35123 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Usp4P35123 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Usp4P35123 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp4P35123 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Usp4P35123 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Usp4P35123 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC19.85■□□□□ 0.77
Usp4P35123 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp4P35123 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.84■□□□□ 0.77
Usp4P35123 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC19.84■□□□□ 0.77
Usp4P35123 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Usp4P35123 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Gm6085-201ENSMUST00000182774 1470 ntBASIC19.84■□□□□ 0.77
Usp4P35123 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp4P35123 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms