Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHMT2P34897 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHMT2P34897 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHMT2P34897 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.07■□□□□ 0.96
SHMT2P34897 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.07■□□□□ 0.96
SHMT2P34897 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.07■□□□□ 0.96
SHMT2P34897 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SHMT2P34897 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHMT2P34897 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.06■□□□□ 0.96
SHMT2P34897 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.06■□□□□ 0.96
SHMT2P34897 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SHMT2P34897 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
SHMT2P34897 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHMT2P34897 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHMT2P34897 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.06■□□□□ 0.96
SHMT2P34897 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SHMT2P34897 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHMT2P34897 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.06■□□□□ 0.96
SHMT2P34897 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHMT2P34897 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.06■□□□□ 0.96
SHMT2P34897 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHMT2P34897 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHMT2P34897 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
SHMT2P34897 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHMT2P34897 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHMT2P34897 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
SHMT2P34897 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHMT2P34897 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHMT2P34897 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHMT2P34897 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHMT2P34897 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.05■□□□□ 0.96
SHMT2P34897 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.05■□□□□ 0.96
SHMT2P34897 MIR935-201ENST00000401179 91 ntBASIC21.05■□□□□ 0.96
SHMT2P34897 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.05■□□□□ 0.96
SHMT2P34897 AC079089.2-201ENST00000531211 1277 ntBASIC21.05■□□□□ 0.96
SHMT2P34897 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHMT2P34897 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.05■□□□□ 0.96
SHMT2P34897 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
SHMT2P34897 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHMT2P34897 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.04■□□□□ 0.96
SHMT2P34897 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHMT2P34897 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SHMT2P34897 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SHMT2P34897 AC087742.1-201ENST00000575880 1738 ntBASIC21.04■□□□□ 0.96
SHMT2P34897 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.04■□□□□ 0.96
SHMT2P34897 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
SHMT2P34897 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.04■□□□□ 0.96
SHMT2P34897 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.04■□□□□ 0.96
SHMT2P34897 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHMT2P34897 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHMT2P34897 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
SHMT2P34897 ESRRAP2-201ENST00000418437 1549 ntBASIC21.04■□□□□ 0.96
SHMT2P34897 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SHMT2P34897 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHMT2P34897 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHMT2P34897 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHMT2P34897 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.03■□□□□ 0.96
SHMT2P34897 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHMT2P34897 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.03■□□□□ 0.96
SHMT2P34897 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHMT2P34897 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHMT2P34897 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SHMT2P34897 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHMT2P34897 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHMT2P34897 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHMT2P34897 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
SHMT2P34897 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHMT2P34897 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
SHMT2P34897 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SHMT2P34897 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHMT2P34897 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHMT2P34897 AC027612.3-201ENST00000413684 1047 ntBASIC21.02■□□□□ 0.96
SHMT2P34897 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SHMT2P34897 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.02■□□□□ 0.96
SHMT2P34897 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.02■□□□□ 0.96
SHMT2P34897 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.02■□□□□ 0.96
SHMT2P34897 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SHMT2P34897 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SHMT2P34897 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SHMT2P34897 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.02■□□□□ 0.95
SHMT2P34897 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
SHMT2P34897 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHMT2P34897 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.01■□□□□ 0.95
SHMT2P34897 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHMT2P34897 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SHMT2P34897 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHMT2P34897 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.01■□□□□ 0.95
SHMT2P34897 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.01■□□□□ 0.95
SHMT2P34897 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.01■□□□□ 0.95
SHMT2P34897 SMUG1P1-201ENST00000590640 811 ntBASIC21.01■□□□□ 0.95
SHMT2P34897 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHMT2P34897 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHMT2P34897 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHMT2P34897 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SHMT2P34897 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHMT2P34897 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SHMT2P34897 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.01■□□□□ 0.95
SHMT2P34897 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SHMT2P34897 RARRES2P6-201ENST00000567333 442 ntBASIC21■□□□□ 0.95
SHMT2P34897 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms