Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Nr1i3O35627 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nr1i3O35627 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nr1i3O35627 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nr1i3O35627 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nr1i3O35627 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nr1i3O35627 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nr1i3O35627 Wdr70-203ENSMUST00000227371 1130 ntBASIC20.5■□□□□ 0.87
Nr1i3O35627 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nr1i3O35627 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
Nr1i3O35627 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nr1i3O35627 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Nr1i3O35627 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nr1i3O35627 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Nr1i3O35627 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nr1i3O35627 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Nr1i3O35627 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nr1i3O35627 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nr1i3O35627 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Nr1i3O35627 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Nr1i3O35627 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nr1i3O35627 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nr1i3O35627 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nr1i3O35627 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nr1i3O35627 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nr1i3O35627 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Nr1i3O35627 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nr1i3O35627 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nr1i3O35627 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nr1i3O35627 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Nr1i3O35627 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nr1i3O35627 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nr1i3O35627 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Nr1i3O35627 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nr1i3O35627 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Nr1i3O35627 Gm11421-201ENSMUST00000122124 294 ntBASIC20.47■□□□□ 0.87
Nr1i3O35627 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nr1i3O35627 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Nr1i3O35627 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nr1i3O35627 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
Nr1i3O35627 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nr1i3O35627 Mir7075-201ENSMUST00000184187 82 ntBASIC20.47■□□□□ 0.87
Nr1i3O35627 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.47■□□□□ 0.87
Nr1i3O35627 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Nr1i3O35627 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Nr1i3O35627 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nr1i3O35627 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nr1i3O35627 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.47■□□□□ 0.87
Nr1i3O35627 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.46■□□□□ 0.87
Nr1i3O35627 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Nr1i3O35627 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Nr1i3O35627 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.46■□□□□ 0.87
Nr1i3O35627 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.46■□□□□ 0.87
Nr1i3O35627 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Nr1i3O35627 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nr1i3O35627 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nr1i3O35627 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nr1i3O35627 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nr1i3O35627 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nr1i3O35627 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Nr1i3O35627 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Nr1i3O35627 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Nr1i3O35627 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
Nr1i3O35627 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nr1i3O35627 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nr1i3O35627 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nr1i3O35627 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nr1i3O35627 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.45■□□□□ 0.86
Nr1i3O35627 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.45■□□□□ 0.86
Nr1i3O35627 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nr1i3O35627 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Nr1i3O35627 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
Nr1i3O35627 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Nr1i3O35627 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nr1i3O35627 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC20.44■□□□□ 0.86
Nr1i3O35627 Gm43173-201ENSMUST00000202246 593 ntBASIC20.44■□□□□ 0.86
Nr1i3O35627 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.44■□□□□ 0.86
Nr1i3O35627 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nr1i3O35627 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Nr1i3O35627 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nr1i3O35627 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Nr1i3O35627 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.43■□□□□ 0.86
Nr1i3O35627 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.43■□□□□ 0.86
Nr1i3O35627 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nr1i3O35627 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Nr1i3O35627 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nr1i3O35627 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nr1i3O35627 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.43■□□□□ 0.86
Nr1i3O35627 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nr1i3O35627 Gm27801-201ENSMUST00000184174 223 ntBASIC20.43■□□□□ 0.86
Nr1i3O35627 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Nr1i3O35627 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Nr1i3O35627 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nr1i3O35627 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nr1i3O35627 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Nr1i3O35627 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nr1i3O35627 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nr1i3O35627 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Nr1i3O35627 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Nr1i3O35627 Gm7860-201ENSMUST00000121190 879 ntBASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms