Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Gm18688-201ENSMUST00000204695 1859 ntBASIC21.74■■□□□ 1.07
Trim11Q99PQ2 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trim11Q99PQ2 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim11Q99PQ2 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Trim11Q99PQ2 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Trim11Q99PQ2 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Trim11Q99PQ2 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim11Q99PQ2 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Trim11Q99PQ2 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim11Q99PQ2 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim11Q99PQ2 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Trim11Q99PQ2 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim11Q99PQ2 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim11Q99PQ2 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim11Q99PQ2 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim11Q99PQ2 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.7■■□□□ 1.06
Trim11Q99PQ2 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim11Q99PQ2 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim11Q99PQ2 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim11Q99PQ2 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim11Q99PQ2 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim11Q99PQ2 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Trim11Q99PQ2 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC21.68■■□□□ 1.06
Trim11Q99PQ2 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim11Q99PQ2 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim11Q99PQ2 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim11Q99PQ2 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim11Q99PQ2 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim11Q99PQ2 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim11Q99PQ2 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim11Q99PQ2 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.68■■□□□ 1.06
Trim11Q99PQ2 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim11Q99PQ2 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trim11Q99PQ2 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trim11Q99PQ2 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim11Q99PQ2 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trim11Q99PQ2 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.67■■□□□ 1.06
Trim11Q99PQ2 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim11Q99PQ2 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trim11Q99PQ2 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim11Q99PQ2 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim11Q99PQ2 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC21.66■■□□□ 1.06
Trim11Q99PQ2 Golph3-205ENSMUST00000228671 2842 ntBASIC21.66■■□□□ 1.06
Trim11Q99PQ2 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim11Q99PQ2 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms