Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Scaf4Q6PFF0 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Rarb-207ENSMUST00000225921 2756 ntBASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Grk6-206ENSMUST00000224995 2971 ntBASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scaf4Q6PFF0 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scaf4Q6PFF0 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.84■□□□□ 0.61
Scaf4Q6PFF0 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scaf4Q6PFF0 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Scaf4Q6PFF0 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scaf4Q6PFF0 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scaf4Q6PFF0 Gm42911-201ENSMUST00000199360 1630 ntBASIC18.84■□□□□ 0.61
Scaf4Q6PFF0 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scaf4Q6PFF0 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Scaf4Q6PFF0 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scaf4Q6PFF0 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scaf4Q6PFF0 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scaf4Q6PFF0 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Scaf4Q6PFF0 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scaf4Q6PFF0 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Scaf4Q6PFF0 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Scaf4Q6PFF0 Serp2-204ENSMUST00000228055 705 ntBASIC18.83■□□□□ 0.6
Scaf4Q6PFF0 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scaf4Q6PFF0 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scaf4Q6PFF0 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.83■□□□□ 0.6
Scaf4Q6PFF0 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scaf4Q6PFF0 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.83■□□□□ 0.6
Scaf4Q6PFF0 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Scaf4Q6PFF0 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scaf4Q6PFF0 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Scaf4Q6PFF0 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scaf4Q6PFF0 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scaf4Q6PFF0 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Scaf4Q6PFF0 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scaf4Q6PFF0 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms