Protein–RNA interactions for Protein: Q91XX1

Pcdhgc3, Protocadherin gamma C3, mousemouse

Predictions only

Length 934 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgc3Q91XX1 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.82■■□□□ 1.4
Pcdhgc3Q91XX1 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Pcdhgc3Q91XX1 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.81■■□□□ 1.4
Pcdhgc3Q91XX1 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Pcdhgc3Q91XX1 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
Pcdhgc3Q91XX1 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Pcdhgc3Q91XX1 Gm6345-201ENSMUST00000180378 1691 ntBASIC23.78■■□□□ 1.4
Pcdhgc3Q91XX1 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Pcdhgc3Q91XX1 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Pcdhgc3Q91XX1 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Pcdhgc3Q91XX1 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Pcdhgc3Q91XX1 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Pcdhgc3Q91XX1 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Pcdhgc3Q91XX1 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC23.74■■□□□ 1.39
Pcdhgc3Q91XX1 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
Pcdhgc3Q91XX1 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Pcdhgc3Q91XX1 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Pcdhgc3Q91XX1 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Pcdhgc3Q91XX1 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Pcdhgc3Q91XX1 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Pcdhgc3Q91XX1 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdhgc3Q91XX1 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Pcdhgc3Q91XX1 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC23.66■■□□□ 1.38
Pcdhgc3Q91XX1 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC23.65■■□□□ 1.38
Pcdhgc3Q91XX1 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Pcdhgc3Q91XX1 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Pcdhgc3Q91XX1 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdhgc3Q91XX1 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdhgc3Q91XX1 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdhgc3Q91XX1 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Pcdhgc3Q91XX1 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Pcdhgc3Q91XX1 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC23.63■■□□□ 1.37
Pcdhgc3Q91XX1 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Pcdhgc3Q91XX1 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Pcdhgc3Q91XX1 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Pcdhgc3Q91XX1 AL845457.1-201ENSMUST00000197244 68 ntBASIC23.58■■□□□ 1.37
Pcdhgc3Q91XX1 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Pcdhgc3Q91XX1 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Pcdhgc3Q91XX1 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC23.58■■□□□ 1.36
Pcdhgc3Q91XX1 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Pcdhgc3Q91XX1 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Pcdhgc3Q91XX1 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
Pcdhgc3Q91XX1 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
Pcdhgc3Q91XX1 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Pcdhgc3Q91XX1 AC153890.1-201ENSMUST00000220021 2469 ntBASIC23.54■■□□□ 1.36
Pcdhgc3Q91XX1 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.53■■□□□ 1.36
Pcdhgc3Q91XX1 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Pcdhgc3Q91XX1 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Pcdhgc3Q91XX1 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC23.52■■□□□ 1.35
Pcdhgc3Q91XX1 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgc3Q91XX1 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgc3Q91XX1 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgc3Q91XX1 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgc3Q91XX1 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Pcdhgc3Q91XX1 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Pcdhgc3Q91XX1 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Pcdhgc3Q91XX1 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
Pcdhgc3Q91XX1 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Pcdhgc3Q91XX1 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Pcdhgc3Q91XX1 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Pcdhgc3Q91XX1 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Pcdhgc3Q91XX1 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Pcdhgc3Q91XX1 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Pcdhgc3Q91XX1 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdhgc3Q91XX1 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Pcdhgc3Q91XX1 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Pcdhgc3Q91XX1 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Pcdhgc3Q91XX1 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.34
Pcdhgc3Q91XX1 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Pcdhgc3Q91XX1 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhgc3Q91XX1 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Pcdhgc3Q91XX1 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC23.38■■□□□ 1.33
Pcdhgc3Q91XX1 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Pcdhgc3Q91XX1 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Pcdhgc3Q91XX1 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgc3Q91XX1 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgc3Q91XX1 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Pcdhgc3Q91XX1 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Pcdhgc3Q91XX1 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Pcdhgc3Q91XX1 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
Pcdhgc3Q91XX1 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhgc3Q91XX1 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhgc3Q91XX1 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Pcdhgc3Q91XX1 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhgc3Q91XX1 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhgc3Q91XX1 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Pcdhgc3Q91XX1 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC23.33■■□□□ 1.33
Pcdhgc3Q91XX1 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Pcdhgc3Q91XX1 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms