Protein–RNA interactions for Protein: Q8VHY0

Cspg4, Chondroitin sulfate proteoglycan 4, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cspg4Q8VHY0 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Cspg4Q8VHY0 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Cspg4Q8VHY0 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cspg4Q8VHY0 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Cspg4Q8VHY0 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC22.53■■□□□ 1.2
Cspg4Q8VHY0 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Cspg4Q8VHY0 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC22.52■■□□□ 1.2
Cspg4Q8VHY0 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Cspg4Q8VHY0 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cspg4Q8VHY0 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cspg4Q8VHY0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Cspg4Q8VHY0 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
Cspg4Q8VHY0 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Cspg4Q8VHY0 Gm7432-201ENSMUST00000210343 879 ntBASIC22.47■■□□□ 1.19
Cspg4Q8VHY0 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC22.46■■□□□ 1.19
Cspg4Q8VHY0 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC22.45■■□□□ 1.18
Cspg4Q8VHY0 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Cspg4Q8VHY0 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC22.43■■□□□ 1.18
Cspg4Q8VHY0 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC22.42■■□□□ 1.18
Cspg4Q8VHY0 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
Cspg4Q8VHY0 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Cspg4Q8VHY0 Mir6538-201ENSMUST00000183713 110 ntBASIC22.41■■□□□ 1.18
Cspg4Q8VHY0 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Cspg4Q8VHY0 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Cspg4Q8VHY0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Cspg4Q8VHY0 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Cspg4Q8VHY0 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
Cspg4Q8VHY0 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Cspg4Q8VHY0 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC22.4■■□□□ 1.18
Cspg4Q8VHY0 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Cspg4Q8VHY0 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC22.39■■□□□ 1.18
Cspg4Q8VHY0 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC22.39■■□□□ 1.17
Cspg4Q8VHY0 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cspg4Q8VHY0 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
Cspg4Q8VHY0 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Cspg4Q8VHY0 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC22.35■■□□□ 1.17
Cspg4Q8VHY0 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
Cspg4Q8VHY0 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
Cspg4Q8VHY0 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Cspg4Q8VHY0 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC22.33■■□□□ 1.17
Cspg4Q8VHY0 Cap2-205ENSMUST00000225824 1634 ntBASIC22.31■■□□□ 1.16
Cspg4Q8VHY0 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cspg4Q8VHY0 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cspg4Q8VHY0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cspg4Q8VHY0 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.3■■□□□ 1.16
Cspg4Q8VHY0 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Cspg4Q8VHY0 Gm43863-201ENSMUST00000203822 1192 ntBASIC22.3■■□□□ 1.16
Cspg4Q8VHY0 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC22.29■■□□□ 1.16
Cspg4Q8VHY0 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Cspg4Q8VHY0 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Cspg4Q8VHY0 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Cspg4Q8VHY0 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Cspg4Q8VHY0 AC157572.2-201ENSMUST00000226970 908 ntBASIC22.29■■□□□ 1.16
Cspg4Q8VHY0 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Cspg4Q8VHY0 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Cspg4Q8VHY0 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
Cspg4Q8VHY0 Gm42809-201ENSMUST00000198429 1138 ntBASIC22.28■■□□□ 1.16
Cspg4Q8VHY0 Gm11175-201ENSMUST00000116172 543 ntBASIC22.24■■□□□ 1.15
Cspg4Q8VHY0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Cspg4Q8VHY0 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cspg4Q8VHY0 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cspg4Q8VHY0 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cspg4Q8VHY0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
Cspg4Q8VHY0 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC22.21■■□□□ 1.15
Cspg4Q8VHY0 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC22.21■■□□□ 1.15
Cspg4Q8VHY0 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Cspg4Q8VHY0 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Cspg4Q8VHY0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Cspg4Q8VHY0 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Cspg4Q8VHY0 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC22.19■■□□□ 1.14
Cspg4Q8VHY0 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Cspg4Q8VHY0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.17■■□□□ 1.14
Cspg4Q8VHY0 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Cspg4Q8VHY0 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Cspg4Q8VHY0 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Cspg4Q8VHY0 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC22.15■■□□□ 1.14
Cspg4Q8VHY0 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Cspg4Q8VHY0 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
Cspg4Q8VHY0 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
Cspg4Q8VHY0 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Cspg4Q8VHY0 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Cspg4Q8VHY0 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cspg4Q8VHY0 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cspg4Q8VHY0 Gm11599-201ENSMUST00000118720 878 ntBASIC22.09■■□□□ 1.13
Cspg4Q8VHY0 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Cspg4Q8VHY0 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cspg4Q8VHY0 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
Cspg4Q8VHY0 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Cspg4Q8VHY0 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Cspg4Q8VHY0 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Cspg4Q8VHY0 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cspg4Q8VHY0 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Cspg4Q8VHY0 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Cspg4Q8VHY0 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Cspg4Q8VHY0 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Cspg4Q8VHY0 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Cspg4Q8VHY0 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Cspg4Q8VHY0 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Cspg4Q8VHY0 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
Cspg4Q8VHY0 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms