Protein–RNA interactions for Protein: P25318

Col8a2, Collagen alpha-2(VIII) chain, mousemouse

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a2P25318 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col8a2P25318 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col8a2P25318 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col8a2P25318 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col8a2P25318 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col8a2P25318 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Col8a2P25318 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col8a2P25318 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col8a2P25318 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC21.38■■□□□ 1.01
Col8a2P25318 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Col8a2P25318 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
Col8a2P25318 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC21.38■■□□□ 1.01
Col8a2P25318 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col8a2P25318 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col8a2P25318 Tdp2-203ENSMUST00000223804 1136 ntBASIC21.35■■□□□ 1.01
Col8a2P25318 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col8a2P25318 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Col8a2P25318 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC21.34■■□□□ 1.01
Col8a2P25318 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Col8a2P25318 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Col8a2P25318 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col8a2P25318 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC21.32■■□□□ 1
Col8a2P25318 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC21.32■■□□□ 1
Col8a2P25318 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col8a2P25318 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC21.31■■□□□ 1
Col8a2P25318 Gm45855-201ENSMUST00000212546 880 ntBASIC21.31■■□□□ 1
Col8a2P25318 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col8a2P25318 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col8a2P25318 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col8a2P25318 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col8a2P25318 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.28■■□□□ 1
Col8a2P25318 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC21.28■■□□□ 1
Col8a2P25318 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC21.28■■□□□ 1
Col8a2P25318 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col8a2P25318 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col8a2P25318 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col8a2P25318 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col8a2P25318 Gm9397-201ENSMUST00000200125 605 ntBASIC21.25■□□□□ 0.99
Col8a2P25318 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col8a2P25318 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Col8a2P25318 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col8a2P25318 Gm30346-201ENSMUST00000218641 1699 ntBASIC21.24■□□□□ 0.99
Col8a2P25318 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col8a2P25318 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col8a2P25318 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col8a2P25318 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC21.22■□□□□ 0.99
Col8a2P25318 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col8a2P25318 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col8a2P25318 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col8a2P25318 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
Col8a2P25318 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC21.2■□□□□ 0.98
Col8a2P25318 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col8a2P25318 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col8a2P25318 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.19■□□□□ 0.98
Col8a2P25318 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col8a2P25318 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col8a2P25318 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col8a2P25318 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.17■□□□□ 0.98
Col8a2P25318 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
Col8a2P25318 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col8a2P25318 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Col8a2P25318 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
Col8a2P25318 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col8a2P25318 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col8a2P25318 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
Col8a2P25318 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col8a2P25318 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Col8a2P25318 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col8a2P25318 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col8a2P25318 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col8a2P25318 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col8a2P25318 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col8a2P25318 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC21.12■□□□□ 0.97
Col8a2P25318 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col8a2P25318 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Col8a2P25318 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col8a2P25318 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col8a2P25318 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC21.1■□□□□ 0.97
Col8a2P25318 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col8a2P25318 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col8a2P25318 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col8a2P25318 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col8a2P25318 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Col8a2P25318 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col8a2P25318 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.07■□□□□ 0.96
Col8a2P25318 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC21.07■□□□□ 0.96
Col8a2P25318 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC21.07■□□□□ 0.96
Col8a2P25318 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col8a2P25318 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col8a2P25318 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21.06■□□□□ 0.96
Col8a2P25318 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Col8a2P25318 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col8a2P25318 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col8a2P25318 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col8a2P25318 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC21.02■□□□□ 0.96
Col8a2P25318 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC21.02■□□□□ 0.96
Col8a2P25318 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col8a2P25318 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col8a2P25318 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col8a2P25318 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms