Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC31,03■■■□□ 2,56
Col1a1P11087 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC31,02■■■□□ 2,56
Col1a1P11087 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC31■■■□□ 2,55
Col1a1P11087 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC30,99■■■□□ 2,55
Col1a1P11087 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC30,99■■■□□ 2,55
Col1a1P11087 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC30,99■■■□□ 2,55
Col1a1P11087 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC30,99■■■□□ 2,55
Col1a1P11087 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC30,98■■■□□ 2,55
Col1a1P11087 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC30,98■■■□□ 2,55
Col1a1P11087 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC30,95■■■□□ 2,55
Col1a1P11087 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC30,95■■■□□ 2,54
Col1a1P11087 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC30,92■■■□□ 2,54
Col1a1P11087 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC30,92■■■□□ 2,54
Col1a1P11087 Gm43863-201ENSMUST00000203822 1192 ntBASIC30,92■■■□□ 2,54
Col1a1P11087 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC30,92■■■□□ 2,54
Col1a1P11087 Gm6821-201ENSMUST00000107540 542 ntBASIC30,91■■■□□ 2,54
Col1a1P11087 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC30,9■■■□□ 2,54
Col1a1P11087 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC30,9■■■□□ 2,54
Col1a1P11087 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC30,88■■■□□ 2,53
Col1a1P11087 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC30,88■■■□□ 2,53
Col1a1P11087 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC30,87■■■□□ 2,53
Col1a1P11087 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC30,85■■■□□ 2,53
Col1a1P11087 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC30,84■■■□□ 2,53
Col1a1P11087 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC30,83■■■□□ 2,53
Col1a1P11087 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC30,82■■■□□ 2,53
Col1a1P11087 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC30,82■■■□□ 2,52
Col1a1P11087 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC30,8■■■□□ 2,52
Col1a1P11087 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC30,8■■■□□ 2,52
Col1a1P11087 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC30,77■■■□□ 2,52
Col1a1P11087 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC30,73■■■□□ 2,51
Col1a1P11087 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC30,72■■■□□ 2,51
Col1a1P11087 AC157572.2-201ENSMUST00000226970 908 ntBASIC30,72■■■□□ 2,51
Col1a1P11087 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC30,71■■■□□ 2,51
Col1a1P11087 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC30,71■■■□□ 2,51
Col1a1P11087 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC30,7■■■□□ 2,51
Col1a1P11087 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC30,7■■■□□ 2,5
Col1a1P11087 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC30,69■■■□□ 2,5
Col1a1P11087 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC30,68■■■□□ 2,5
Col1a1P11087 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC30,67■■■□□ 2,5
Col1a1P11087 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC30,67■■■□□ 2,5
Col1a1P11087 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC30,66■■■□□ 2,5
Col1a1P11087 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC30,64■■■□□ 2,5
Col1a1P11087 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC30,64■■■□□ 2,49
Col1a1P11087 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC30,63■■■□□ 2,49
Col1a1P11087 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC30,62■■■□□ 2,49
Col1a1P11087 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC30,62■■■□□ 2,49
Col1a1P11087 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC30,62■■■□□ 2,49
Col1a1P11087 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC30,61■■■□□ 2,49
Col1a1P11087 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC30,61■■■□□ 2,49
Col1a1P11087 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC30,6■■■□□ 2,49
Col1a1P11087 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC30,6■■■□□ 2,49
Col1a1P11087 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC30,59■■■□□ 2,49
Col1a1P11087 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC30,57■■■□□ 2,48
Col1a1P11087 Gm42809-201ENSMUST00000198429 1138 ntBASIC30,57■■■□□ 2,48
Col1a1P11087 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC30,57■■■□□ 2,48
Col1a1P11087 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC30,56■■■□□ 2,48
Col1a1P11087 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC30,56■■■□□ 2,48
Col1a1P11087 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC30,55■■■□□ 2,48
Col1a1P11087 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC30,55■■■□□ 2,48
Col1a1P11087 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC30,53■■■□□ 2,48
Col1a1P11087 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC30,52■■■□□ 2,48
Col1a1P11087 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC30,51■■■□□ 2,47
Col1a1P11087 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC30,51■■■□□ 2,47
Col1a1P11087 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC30,5■■■□□ 2,47
Col1a1P11087 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC30,5■■■□□ 2,47
Col1a1P11087 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC30,48■■■□□ 2,47
Col1a1P11087 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC30,47■■■□□ 2,47
Col1a1P11087 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC30,47■■■□□ 2,47
Col1a1P11087 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC30,46■■■□□ 2,47
Col1a1P11087 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC30,44■■■□□ 2,46
Col1a1P11087 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC30,43■■■□□ 2,46
Col1a1P11087 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC30,43■■■□□ 2,46
Col1a1P11087 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC30,4■■■□□ 2,46
Col1a1P11087 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC30,4■■■□□ 2,46
Col1a1P11087 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30,4■■■□□ 2,46
Col1a1P11087 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC30,39■■■□□ 2,46
Col1a1P11087 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC30,38■■■□□ 2,45
Col1a1P11087 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC30,38■■■□□ 2,45
Col1a1P11087 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC30,37■■■□□ 2,45
Col1a1P11087 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC30,36■■■□□ 2,45
Col1a1P11087 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC30,34■■■□□ 2,45
Col1a1P11087 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC30,34■■■□□ 2,45
Col1a1P11087 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC30,34■■■□□ 2,45
Col1a1P11087 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC30,33■■■□□ 2,45
Col1a1P11087 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC30,33■■■□□ 2,45
Col1a1P11087 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC30,32■■■□□ 2,44
Col1a1P11087 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC30,32■■■□□ 2,44
Col1a1P11087 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC30,32■■■□□ 2,44
Col1a1P11087 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC30,32■■■□□ 2,44
Col1a1P11087 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC30,31■■■□□ 2,44
Col1a1P11087 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC30,31■■■□□ 2,44
Col1a1P11087 Nkain2-201ENSMUST00000092602 558 ntBASIC30,31■■■□□ 2,44
Col1a1P11087 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC30,3■■■□□ 2,44
Col1a1P11087 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC30,29■■■□□ 2,44
Col1a1P11087 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC30,29■■■□□ 2,44
Col1a1P11087 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC30,29■■■□□ 2,44
Col1a1P11087 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC30,28■■■□□ 2,44
Col1a1P11087 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC30,28■■■□□ 2,44
Col1a1P11087 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC30,26■■■□□ 2,43
Col1a1P11087 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC30,25■■■□□ 2,43
Retrieved 100 of 76,532 protein–RNA pairs in 9,5 ms