Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC32,65■■■□□ 2,82
Col4a1P02463 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC32,65■■■□□ 2,82
Col4a1P02463 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC32,64■■■□□ 2,82
Col4a1P02463 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC32,63■■■□□ 2,81
Col4a1P02463 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC32,63■■■□□ 2,81
Col4a1P02463 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC32,62■■■□□ 2,81
Col4a1P02463 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC32,62■■■□□ 2,81
Col4a1P02463 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC32,62■■■□□ 2,81
Col4a1P02463 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC32,6■■■□□ 2,81
Col4a1P02463 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC32,6■■■□□ 2,81
Col4a1P02463 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC32,59■■■□□ 2,81
Col4a1P02463 Gm24970-201ENSMUST00000175582 82 ntBASIC32,59■■■□□ 2,81
Col4a1P02463 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC32,58■■■□□ 2,81
Col4a1P02463 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC32,57■■■□□ 2,8
Col4a1P02463 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC32,53■■■□□ 2,8
Col4a1P02463 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC32,52■■■□□ 2,8
Col4a1P02463 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC32,51■■■□□ 2,8
Col4a1P02463 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC32,51■■■□□ 2,8
Col4a1P02463 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC32,5■■■□□ 2,79
Col4a1P02463 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC32,48■■■□□ 2,79
Col4a1P02463 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC32,47■■■□□ 2,79
Col4a1P02463 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC32,46■■■□□ 2,79
Col4a1P02463 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC32,46■■■□□ 2,79
Col4a1P02463 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC32,44■■■□□ 2,78
Col4a1P02463 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC32,43■■■□□ 2,78
Col4a1P02463 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC32,42■■■□□ 2,78
Col4a1P02463 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC32,41■■■□□ 2,78
Col4a1P02463 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC32,39■■■□□ 2,78
Col4a1P02463 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC32,39■■■□□ 2,78
Col4a1P02463 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC32,39■■■□□ 2,77
Col4a1P02463 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC32,38■■■□□ 2,77
Col4a1P02463 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC32,36■■■□□ 2,77
Col4a1P02463 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC32,35■■■□□ 2,77
Col4a1P02463 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC32,35■■■□□ 2,77
Col4a1P02463 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC32,35■■■□□ 2,77
Col4a1P02463 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC32,33■■■□□ 2,77
Col4a1P02463 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC32,31■■■□□ 2,76
Col4a1P02463 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC32,31■■■□□ 2,76
Col4a1P02463 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC32,28■■■□□ 2,76
Col4a1P02463 Gm43863-201ENSMUST00000203822 1192 ntBASIC32,28■■■□□ 2,76
Col4a1P02463 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC32,27■■■□□ 2,76
Col4a1P02463 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC32,27■■■□□ 2,76
Col4a1P02463 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC32,26■■■□□ 2,75
Col4a1P02463 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC32,25■■■□□ 2,75
Col4a1P02463 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC32,25■■■□□ 2,75
Col4a1P02463 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC32,24■■■□□ 2,75
Col4a1P02463 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC32,24■■■□□ 2,75
Col4a1P02463 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC32,24■■■□□ 2,75
Col4a1P02463 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC32,24■■■□□ 2,75
Col4a1P02463 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC32,24■■■□□ 2,75
Col4a1P02463 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC32,23■■■□□ 2,75
Col4a1P02463 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC32,22■■■□□ 2,75
Col4a1P02463 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC32,21■■■□□ 2,75
Col4a1P02463 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC32,21■■■□□ 2,75
Col4a1P02463 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC32,21■■■□□ 2,75
Col4a1P02463 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC32,21■■■□□ 2,75
Col4a1P02463 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC32,21■■■□□ 2,75
Col4a1P02463 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC32,18■■■□□ 2,74
Col4a1P02463 Gm2415-204ENSMUST00000190235 2004 ntBASIC32,17■■■□□ 2,74
Col4a1P02463 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC32,17■■■□□ 2,74
Col4a1P02463 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC32,17■■■□□ 2,74
Col4a1P02463 Gm9939-201ENSMUST00000067161 1154 ntBASIC32,17■■■□□ 2,74
Col4a1P02463 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC32,17■■■□□ 2,74
Col4a1P02463 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC32,17■■■□□ 2,74
Col4a1P02463 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC32,16■■■□□ 2,74
Col4a1P02463 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC32,16■■■□□ 2,74
Col4a1P02463 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC32,15■■■□□ 2,74
Col4a1P02463 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC32,14■■■□□ 2,74
Col4a1P02463 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC32,14■■■□□ 2,74
Col4a1P02463 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC32,12■■■□□ 2,73
Col4a1P02463 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC32,11■■■□□ 2,73
Col4a1P02463 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC32,11■■■□□ 2,73
Col4a1P02463 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC32,1■■■□□ 2,73
Col4a1P02463 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC32,09■■■□□ 2,73
Col4a1P02463 Gm30346-201ENSMUST00000218641 1699 ntBASIC32,09■■■□□ 2,73
Col4a1P02463 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC32,07■■■□□ 2,72
Col4a1P02463 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC32,07■■■□□ 2,72
Col4a1P02463 AC157572.2-201ENSMUST00000226970 908 ntBASIC32,07■■■□□ 2,72
Col4a1P02463 Gm8503-201ENSMUST00000118131 455 ntBASIC32,06■■■□□ 2,72
Col4a1P02463 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC32,05■■■□□ 2,72
Col4a1P02463 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC32,04■■■□□ 2,72
Col4a1P02463 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC32■■■□□ 2,71
Col4a1P02463 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2,71
Col4a1P02463 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31,99■■■□□ 2,71
Col4a1P02463 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC31,98■■■□□ 2,71
Col4a1P02463 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC31,97■■■□□ 2,71
Col4a1P02463 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC31,97■■■□□ 2,71
Col4a1P02463 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC31,95■■■□□ 2,7
Col4a1P02463 Gm5987-201ENSMUST00000196433 1151 ntBASIC31,95■■■□□ 2,7
Col4a1P02463 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC31,93■■■□□ 2,7
Col4a1P02463 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC31,92■■■□□ 2,7
Col4a1P02463 Gm6821-201ENSMUST00000107540 542 ntBASIC31,92■■■□□ 2,7
Col4a1P02463 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC31,91■■■□□ 2,7
Col4a1P02463 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC31,91■■■□□ 2,7
Col4a1P02463 Gm42809-201ENSMUST00000198429 1138 ntBASIC31,91■■■□□ 2,7
Col4a1P02463 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC31,9■■■□□ 2,7
Col4a1P02463 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC31,89■■■□□ 2,7
Col4a1P02463 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC31,87■■■□□ 2,69
Col4a1P02463 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC31,86■■■□□ 2,69
Col4a1P02463 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC31,85■■■□□ 2,69
Retrieved 100 of 76,532 protein–RNA pairs in 26,2 ms