Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC17.2■□□□□ 0.34
Trav4-3A0A0B4J1K1 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav4-3A0A0B4J1K1 Gm6345-201ENSMUST00000180378 1691 ntBASIC17.19■□□□□ 0.34
Trav4-3A0A0B4J1K1 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav4-3A0A0B4J1K1 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav4-3A0A0B4J1K1 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav4-3A0A0B4J1K1 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
Trav4-3A0A0B4J1K1 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav4-3A0A0B4J1K1 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trav4-3A0A0B4J1K1 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trav4-3A0A0B4J1K1 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trav4-3A0A0B4J1K1 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav4-3A0A0B4J1K1 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav4-3A0A0B4J1K1 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav4-3A0A0B4J1K1 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav4-3A0A0B4J1K1 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trav4-3A0A0B4J1K1 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC17.11■□□□□ 0.33
Trav4-3A0A0B4J1K1 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav4-3A0A0B4J1K1 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav4-3A0A0B4J1K1 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav4-3A0A0B4J1K1 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trav4-3A0A0B4J1K1 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav4-3A0A0B4J1K1 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav4-3A0A0B4J1K1 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trav4-3A0A0B4J1K1 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav4-3A0A0B4J1K1 Mipep-204ENSMUST00000225043 1548 ntBASIC17.07■□□□□ 0.32
Trav4-3A0A0B4J1K1 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trav4-3A0A0B4J1K1 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav4-3A0A0B4J1K1 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav4-3A0A0B4J1K1 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav4-3A0A0B4J1K1 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC17.06■□□□□ 0.32
Trav4-3A0A0B4J1K1 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC17.05■□□□□ 0.32
Trav4-3A0A0B4J1K1 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav4-3A0A0B4J1K1 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC17.04■□□□□ 0.32
Trav4-3A0A0B4J1K1 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav4-3A0A0B4J1K1 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav4-3A0A0B4J1K1 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trav4-3A0A0B4J1K1 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Trav4-3A0A0B4J1K1 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
Trav4-3A0A0B4J1K1 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC17.02■□□□□ 0.32
Trav4-3A0A0B4J1K1 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav4-3A0A0B4J1K1 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav4-3A0A0B4J1K1 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav4-3A0A0B4J1K1 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav4-3A0A0B4J1K1 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Trav4-3A0A0B4J1K1 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav4-3A0A0B4J1K1 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav4-3A0A0B4J1K1 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trav4-3A0A0B4J1K1 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC16.98■□□□□ 0.31
Trav4-3A0A0B4J1K1 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trav4-3A0A0B4J1K1 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC16.98■□□□□ 0.31
Trav4-3A0A0B4J1K1 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Trav4-3A0A0B4J1K1 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav4-3A0A0B4J1K1 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav4-3A0A0B4J1K1 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav4-3A0A0B4J1K1 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC16.97■□□□□ 0.31
Trav4-3A0A0B4J1K1 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trav4-3A0A0B4J1K1 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav4-3A0A0B4J1K1 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav4-3A0A0B4J1K1 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Trav4-3A0A0B4J1K1 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav4-3A0A0B4J1K1 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Trav4-3A0A0B4J1K1 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav4-3A0A0B4J1K1 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav4-3A0A0B4J1K1 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav4-3A0A0B4J1K1 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trav4-3A0A0B4J1K1 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav4-3A0A0B4J1K1 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav4-3A0A0B4J1K1 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trav4-3A0A0B4J1K1 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Trav4-3A0A0B4J1K1 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Trav4-3A0A0B4J1K1 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trav4-3A0A0B4J1K1 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trav4-3A0A0B4J1K1 AC153890.1-201ENSMUST00000220021 2469 ntBASIC16.9■□□□□ 0.3
Trav4-3A0A0B4J1K1 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Trav4-3A0A0B4J1K1 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Trav4-3A0A0B4J1K1 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Trav4-3A0A0B4J1K1 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav4-3A0A0B4J1K1 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav4-3A0A0B4J1K1 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav4-3A0A0B4J1K1 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trav4-3A0A0B4J1K1 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trav4-3A0A0B4J1K1 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trav4-3A0A0B4J1K1 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trav4-3A0A0B4J1K1 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trav4-3A0A0B4J1K1 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trav4-3A0A0B4J1K1 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trav4-3A0A0B4J1K1 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC16.86■□□□□ 0.29
Trav4-3A0A0B4J1K1 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trav4-3A0A0B4J1K1 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trav4-3A0A0B4J1K1 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trav4-3A0A0B4J1K1 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
Trav4-3A0A0B4J1K1 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Trav4-3A0A0B4J1K1 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trav4-3A0A0B4J1K1 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
Trav4-3A0A0B4J1K1 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.29
Trav4-3A0A0B4J1K1 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trav4-3A0A0B4J1K1 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trav4-3A0A0B4J1K1 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav4-3A0A0B4J1K1 AL845457.1-201ENSMUST00000197244 68 ntBASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms