Protein–RNA interactions for Protein: A0A075B653

Trav16, T cell receptor alpha variable 16 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16A0A075B653 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trav16A0A075B653 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav16A0A075B653 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav16A0A075B653 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trav16A0A075B653 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav16A0A075B653 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Trav16A0A075B653 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC19.33■□□□□ 0.68
Trav16A0A075B653 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trav16A0A075B653 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trav16A0A075B653 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.32■□□□□ 0.68
Trav16A0A075B653 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Trav16A0A075B653 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav16A0A075B653 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav16A0A075B653 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav16A0A075B653 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trav16A0A075B653 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trav16A0A075B653 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Trav16A0A075B653 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trav16A0A075B653 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav16A0A075B653 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav16A0A075B653 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Trav16A0A075B653 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav16A0A075B653 Amer2-203ENSMUST00000225247 2662 ntBASIC19.19■□□□□ 0.66
Trav16A0A075B653 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Trav16A0A075B653 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav16A0A075B653 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav16A0A075B653 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav16A0A075B653 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trav16A0A075B653 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav16A0A075B653 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav16A0A075B653 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trav16A0A075B653 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trav16A0A075B653 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Trav16A0A075B653 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav16A0A075B653 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav16A0A075B653 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav16A0A075B653 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trav16A0A075B653 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trav16A0A075B653 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav16A0A075B653 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav16A0A075B653 Gm6345-201ENSMUST00000180378 1691 ntBASIC19.14■□□□□ 0.66
Trav16A0A075B653 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav16A0A075B653 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Trav16A0A075B653 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC19.11■□□□□ 0.65
Trav16A0A075B653 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav16A0A075B653 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav16A0A075B653 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav16A0A075B653 Fezf2-202ENSMUST00000224023 1917 ntBASIC19.08■□□□□ 0.65
Trav16A0A075B653 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav16A0A075B653 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav16A0A075B653 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav16A0A075B653 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trav16A0A075B653 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Trav16A0A075B653 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav16A0A075B653 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trav16A0A075B653 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav16A0A075B653 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav16A0A075B653 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trav16A0A075B653 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC19.05■□□□□ 0.64
Trav16A0A075B653 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav16A0A075B653 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trav16A0A075B653 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav16A0A075B653 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Trav16A0A075B653 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trav16A0A075B653 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav16A0A075B653 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Trav16A0A075B653 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav16A0A075B653 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.02■□□□□ 0.64
Trav16A0A075B653 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trav16A0A075B653 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Trav16A0A075B653 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav16A0A075B653 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav16A0A075B653 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trav16A0A075B653 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trav16A0A075B653 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Trav16A0A075B653 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC18.99■□□□□ 0.63
Trav16A0A075B653 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav16A0A075B653 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav16A0A075B653 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trav16A0A075B653 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav16A0A075B653 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav16A0A075B653 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC18.99■□□□□ 0.63
Trav16A0A075B653 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav16A0A075B653 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC18.98■□□□□ 0.63
Trav16A0A075B653 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav16A0A075B653 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav16A0A075B653 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trav16A0A075B653 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav16A0A075B653 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trav16A0A075B653 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trav16A0A075B653 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Trav16A0A075B653 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Trav16A0A075B653 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trav16A0A075B653 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC18.93■□□□□ 0.62
Trav16A0A075B653 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC18.92■□□□□ 0.62
Trav16A0A075B653 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav16A0A075B653 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav16A0A075B653 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav16A0A075B653 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC18.91■□□□□ 0.62
Trav16A0A075B653 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms