Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Ccdc28aQ8CEI3 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.24■□□□□ 0.83
Ccdc28aQ8CEI3 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc28aQ8CEI3 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc28aQ8CEI3 BC021767-201ENSMUST00000126387 1716 ntBASIC20.24■□□□□ 0.83
Ccdc28aQ8CEI3 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Ccdc28aQ8CEI3 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc28aQ8CEI3 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Ccdc28aQ8CEI3 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc28aQ8CEI3 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc28aQ8CEI3 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.22■□□□□ 0.83
Ccdc28aQ8CEI3 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.22■□□□□ 0.83
Ccdc28aQ8CEI3 Gm22238-201ENSMUST00000175222 88 ntBASIC20.22■□□□□ 0.83
Ccdc28aQ8CEI3 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC20.22■□□□□ 0.83
Ccdc28aQ8CEI3 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Ccdc28aQ8CEI3 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc28aQ8CEI3 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Ccdc28aQ8CEI3 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Ccdc28aQ8CEI3 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Ccdc28aQ8CEI3 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Gm5812-201ENSMUST00000061073 957 ntBASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc28aQ8CEI3 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Ccdc28aQ8CEI3 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Gm15546-201ENSMUST00000122095 826 ntBASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ccdc28aQ8CEI3 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc28aQ8CEI3 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Ccdc28aQ8CEI3 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc28aQ8CEI3 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.17■□□□□ 0.82
Ccdc28aQ8CEI3 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc28aQ8CEI3 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc28aQ8CEI3 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc28aQ8CEI3 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ccdc28aQ8CEI3 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Ccdc28aQ8CEI3 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc28aQ8CEI3 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc28aQ8CEI3 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc28aQ8CEI3 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc28aQ8CEI3 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc28aQ8CEI3 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
Ccdc28aQ8CEI3 Rncr4-201ENSMUST00000194541 2234 ntBASIC20.15■□□□□ 0.82
Ccdc28aQ8CEI3 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Ccdc28aQ8CEI3 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms