Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cln3Q61124 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cln3Q61124 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cln3Q61124 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cln3Q61124 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cln3Q61124 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cln3Q61124 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cln3Q61124 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cln3Q61124 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Cln3Q61124 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Cln3Q61124 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Cln3Q61124 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC21.25■□□□□ 0.99
Cln3Q61124 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.25■□□□□ 0.99
Cln3Q61124 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cln3Q61124 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cln3Q61124 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cln3Q61124 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cln3Q61124 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cln3Q61124 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cln3Q61124 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cln3Q61124 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Cln3Q61124 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cln3Q61124 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cln3Q61124 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC21.23■□□□□ 0.99
Cln3Q61124 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cln3Q61124 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Cln3Q61124 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cln3Q61124 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cln3Q61124 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cln3Q61124 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cln3Q61124 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.22■□□□□ 0.99
Cln3Q61124 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cln3Q61124 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.22■□□□□ 0.99
Cln3Q61124 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cln3Q61124 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Cln3Q61124 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Cln3Q61124 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Cln3Q61124 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cln3Q61124 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC21.21■□□□□ 0.99
Cln3Q61124 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cln3Q61124 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cln3Q61124 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cln3Q61124 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cln3Q61124 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cln3Q61124 Gm27275-201ENSMUST00000184318 272 ntBASIC21.2■□□□□ 0.98
Cln3Q61124 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
Cln3Q61124 Gm13509-201ENSMUST00000119733 1308 ntBASIC21.2■□□□□ 0.98
Cln3Q61124 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
Cln3Q61124 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21.2■□□□□ 0.98
Cln3Q61124 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Cln3Q61124 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cln3Q61124 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cln3Q61124 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cln3Q61124 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.19■□□□□ 0.98
Cln3Q61124 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cln3Q61124 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cln3Q61124 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cln3Q61124 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cln3Q61124 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cln3Q61124 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Cln3Q61124 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cln3Q61124 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cln3Q61124 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cln3Q61124 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Cln3Q61124 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cln3Q61124 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Cln3Q61124 Gm10812-201ENSMUST00000099864 546 ntBASIC21.18■□□□□ 0.98
Cln3Q61124 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.17■□□□□ 0.98
Cln3Q61124 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cln3Q61124 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cln3Q61124 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Cln3Q61124 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Cln3Q61124 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cln3Q61124 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Cln3Q61124 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Cln3Q61124 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cln3Q61124 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.17■□□□□ 0.98
Cln3Q61124 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cln3Q61124 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cln3Q61124 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Cln3Q61124 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Cln3Q61124 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cln3Q61124 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cln3Q61124 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Cln3Q61124 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cln3Q61124 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cln3Q61124 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Cln3Q61124 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.16■□□□□ 0.98
Cln3Q61124 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC21.16■□□□□ 0.98
Cln3Q61124 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cln3Q61124 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Cln3Q61124 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cln3Q61124 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cln3Q61124 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC21.15■□□□□ 0.98
Cln3Q61124 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cln3Q61124 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Cln3Q61124 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Cln3Q61124 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.98
Cln3Q61124 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Cln3Q61124 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms