Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Nr1h4Q60641 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC18.27■□□□□ 0.52
Nr1h4Q60641 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Nr1h4Q60641 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Nr1h4Q60641 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Nr1h4Q60641 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Nr1h4Q60641 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Nr1h4Q60641 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Nr1h4Q60641 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Nr1h4Q60641 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Nr1h4Q60641 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Nr1h4Q60641 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Nr1h4Q60641 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.26■□□□□ 0.51
Nr1h4Q60641 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Nr1h4Q60641 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Nr1h4Q60641 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Nr1h4Q60641 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Nr1h4Q60641 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Gm5522-201ENSMUST00000189483 1242 ntBASIC18.25■□□□□ 0.51
Nr1h4Q60641 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.25■□□□□ 0.51
Nr1h4Q60641 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
Nr1h4Q60641 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.25■□□□□ 0.51
Nr1h4Q60641 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.25■□□□□ 0.51
Nr1h4Q60641 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Nr1h4Q60641 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.24■□□□□ 0.51
Nr1h4Q60641 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.24■□□□□ 0.51
Nr1h4Q60641 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Nr1h4Q60641 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.23■□□□□ 0.51
Nr1h4Q60641 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Nr1h4Q60641 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
Nr1h4Q60641 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
Nr1h4Q60641 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Nr1h4Q60641 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Nr1h4Q60641 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Nr1h4Q60641 Golph3-205ENSMUST00000228671 2842 ntBASIC18.21■□□□□ 0.51
Nr1h4Q60641 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Nr1h4Q60641 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Nr1h4Q60641 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Nr1h4Q60641 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.21■□□□□ 0.51
Nr1h4Q60641 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Nr1h4Q60641 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Nr1h4Q60641 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Nr1h4Q60641 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Nr1h4Q60641 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Nr1h4Q60641 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Nr1h4Q60641 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms