Protein–RNA interactions for Protein: Q3U466

Cln6, Ceroid-lipofuscinosis, neuronal 6, mousemouse

Predictions only

Length 308 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln6Q3U466 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cln6Q3U466 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Cln6Q3U466 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cln6Q3U466 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cln6Q3U466 Gm5522-201ENSMUST00000189483 1242 ntBASIC16.32■□□□□ 0.2
Cln6Q3U466 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cln6Q3U466 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cln6Q3U466 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cln6Q3U466 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC16.31■□□□□ 0.2
Cln6Q3U466 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Cln6Q3U466 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Cln6Q3U466 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cln6Q3U466 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cln6Q3U466 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cln6Q3U466 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cln6Q3U466 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Cln6Q3U466 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Cln6Q3U466 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cln6Q3U466 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cln6Q3U466 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cln6Q3U466 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cln6Q3U466 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Cln6Q3U466 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Cln6Q3U466 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Cln6Q3U466 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cln6Q3U466 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cln6Q3U466 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Cln6Q3U466 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC16.29■□□□□ 0.2
Cln6Q3U466 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cln6Q3U466 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cln6Q3U466 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cln6Q3U466 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cln6Q3U466 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cln6Q3U466 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cln6Q3U466 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cln6Q3U466 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cln6Q3U466 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cln6Q3U466 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cln6Q3U466 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC16.28■□□□□ 0.2
Cln6Q3U466 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cln6Q3U466 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC16.28■□□□□ 0.2
Cln6Q3U466 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC16.28■□□□□ 0.2
Cln6Q3U466 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Cln6Q3U466 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cln6Q3U466 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Cln6Q3U466 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Cln6Q3U466 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Cln6Q3U466 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cln6Q3U466 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cln6Q3U466 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cln6Q3U466 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cln6Q3U466 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cln6Q3U466 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cln6Q3U466 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
Cln6Q3U466 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC16.27■□□□□ 0.2
Cln6Q3U466 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cln6Q3U466 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
Cln6Q3U466 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cln6Q3U466 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cln6Q3U466 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cln6Q3U466 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cln6Q3U466 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Cln6Q3U466 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cln6Q3U466 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Cln6Q3U466 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cln6Q3U466 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cln6Q3U466 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cln6Q3U466 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cln6Q3U466 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cln6Q3U466 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cln6Q3U466 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cln6Q3U466 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Cln6Q3U466 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cln6Q3U466 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cln6Q3U466 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cln6Q3U466 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC16.26■□□□□ 0.19
Cln6Q3U466 Gm15546-201ENSMUST00000122095 826 ntBASIC16.26■□□□□ 0.19
Cln6Q3U466 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cln6Q3U466 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cln6Q3U466 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cln6Q3U466 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cln6Q3U466 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Cln6Q3U466 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cln6Q3U466 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cln6Q3U466 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Cln6Q3U466 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cln6Q3U466 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms