Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Ddb1Q3U1J4 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC24.64■■□□□ 1.54
Ddb1Q3U1J4 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
Ddb1Q3U1J4 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Ddb1Q3U1J4 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Ddb1Q3U1J4 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC24.64■■□□□ 1.54
Ddb1Q3U1J4 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC24.64■■□□□ 1.54
Ddb1Q3U1J4 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC24.64■■□□□ 1.54
Ddb1Q3U1J4 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
Ddb1Q3U1J4 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.53
Ddb1Q3U1J4 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC24.63■■□□□ 1.53
Ddb1Q3U1J4 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
Ddb1Q3U1J4 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC24.63■■□□□ 1.53
Ddb1Q3U1J4 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Ddb1Q3U1J4 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Ddb1Q3U1J4 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC24.63■■□□□ 1.53
Ddb1Q3U1J4 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC24.63■■□□□ 1.53
Ddb1Q3U1J4 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Ddb1Q3U1J4 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC24.62■■□□□ 1.53
Ddb1Q3U1J4 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC24.62■■□□□ 1.53
Ddb1Q3U1J4 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC24.62■■□□□ 1.53
Ddb1Q3U1J4 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC24.62■■□□□ 1.53
Ddb1Q3U1J4 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Ddb1Q3U1J4 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC24.62■■□□□ 1.53
Ddb1Q3U1J4 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC24.62■■□□□ 1.53
Ddb1Q3U1J4 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Ddb1Q3U1J4 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
Ddb1Q3U1J4 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Gm44549-201ENSMUST00000208351 577 ntBASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Gm26766-202ENSMUST00000227544 2347 ntBASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Ddb1Q3U1J4 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 Gm6802-201ENSMUST00000167843 1983 ntBASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 Mir1199-201ENSMUST00000117015 119 ntBASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Ddb1Q3U1J4 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Gm15378-201ENSMUST00000121894 207 ntBASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ddb1Q3U1J4 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Ddb1Q3U1J4 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC24.58■■□□□ 1.53
Ddb1Q3U1J4 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ddb1Q3U1J4 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC24.58■■□□□ 1.53
Ddb1Q3U1J4 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ddb1Q3U1J4 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ddb1Q3U1J4 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC24.58■■□□□ 1.53
Ddb1Q3U1J4 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ddb1Q3U1J4 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Ddb1Q3U1J4 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
Ddb1Q3U1J4 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 AC121577.1-201ENSMUST00000227302 707 ntBASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Gm9987-201ENSMUST00000069768 567 ntBASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Ddb1Q3U1J4 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Ddb1Q3U1J4 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC24.56■■□□□ 1.52
Ddb1Q3U1J4 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms