Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.27■□□□□ 0.68
Cstf1Q99LC2 CT030146.1-201ENSMUST00000220919 217 ntBASIC19.27■□□□□ 0.68
Cstf1Q99LC2 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cstf1Q99LC2 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cstf1Q99LC2 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cstf1Q99LC2 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cstf1Q99LC2 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Cstf1Q99LC2 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cstf1Q99LC2 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cstf1Q99LC2 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cstf1Q99LC2 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cstf1Q99LC2 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.26■□□□□ 0.67
Cstf1Q99LC2 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cstf1Q99LC2 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cstf1Q99LC2 AC130671.1-201ENSMUST00000227384 1237 ntBASIC19.26■□□□□ 0.67
Cstf1Q99LC2 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cstf1Q99LC2 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.26■□□□□ 0.67
Cstf1Q99LC2 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Gm13836-201ENSMUST00000121159 501 ntBASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.25■□□□□ 0.67
Cstf1Q99LC2 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cstf1Q99LC2 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.24■□□□□ 0.67
Cstf1Q99LC2 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Cstf1Q99LC2 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Cstf1Q99LC2 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cstf1Q99LC2 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cstf1Q99LC2 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.24■□□□□ 0.67
Cstf1Q99LC2 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cstf1Q99LC2 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Cstf1Q99LC2 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cstf1Q99LC2 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cstf1Q99LC2 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cstf1Q99LC2 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Cstf1Q99LC2 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cstf1Q99LC2 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cstf1Q99LC2 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cstf1Q99LC2 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cstf1Q99LC2 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.22■□□□□ 0.67
Cstf1Q99LC2 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
Cstf1Q99LC2 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cstf1Q99LC2 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.22■□□□□ 0.67
Cstf1Q99LC2 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Cstf1Q99LC2 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cstf1Q99LC2 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cstf1Q99LC2 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cstf1Q99LC2 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cstf1Q99LC2 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cstf1Q99LC2 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cstf1Q99LC2 Gm13534-201ENSMUST00000121169 513 ntBASIC19.2■□□□□ 0.66
Cstf1Q99LC2 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cstf1Q99LC2 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cstf1Q99LC2 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cstf1Q99LC2 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Cstf1Q99LC2 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cstf1Q99LC2 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cstf1Q99LC2 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Cstf1Q99LC2 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Cstf1Q99LC2 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Cstf1Q99LC2 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cstf1Q99LC2 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC19.18■□□□□ 0.66
Cstf1Q99LC2 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cstf1Q99LC2 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms