Protein–RNA interactions for Protein: Q6P9Z1

Smarcd3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcd3Q6P9Z1 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smarcd3Q6P9Z1 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.65■□□□□ 0.42
Smarcd3Q6P9Z1 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smarcd3Q6P9Z1 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Smarcd3Q6P9Z1 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Smarcd3Q6P9Z1 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smarcd3Q6P9Z1 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smarcd3Q6P9Z1 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smarcd3Q6P9Z1 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smarcd3Q6P9Z1 AA386476-201ENSMUST00000098781 1665 ntBASIC17.64■□□□□ 0.41
Smarcd3Q6P9Z1 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.64■□□□□ 0.41
Smarcd3Q6P9Z1 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Gm8770-201ENSMUST00000121113 1109 ntBASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Gm43759-201ENSMUST00000196925 1261 ntBASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.63■□□□□ 0.41
Smarcd3Q6P9Z1 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Rps24-207ENSMUST00000224568 714 ntBASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Golph3-205ENSMUST00000228671 2842 ntBASIC17.62■□□□□ 0.41
Smarcd3Q6P9Z1 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Gm45102-201ENSMUST00000207427 857 ntBASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Smarcd3Q6P9Z1 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Smarcd3Q6P9Z1 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Smarcd3Q6P9Z1 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Smarcd3Q6P9Z1 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Smarcd3Q6P9Z1 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smarcd3Q6P9Z1 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Smarcd3Q6P9Z1 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC17.58■□□□□ 0.4
Smarcd3Q6P9Z1 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Smarcd3Q6P9Z1 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smarcd3Q6P9Z1 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smarcd3Q6P9Z1 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Smarcd3Q6P9Z1 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Smarcd3Q6P9Z1 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Smarcd3Q6P9Z1 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
Smarcd3Q6P9Z1 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smarcd3Q6P9Z1 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smarcd3Q6P9Z1 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Smarcd3Q6P9Z1 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC17.57■□□□□ 0.4
Smarcd3Q6P9Z1 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Smarcd3Q6P9Z1 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms