Protein–RNA interactions for Protein: Q5M6W3

Clhc1, Clathrin heavy chain linker domain-containing protein 1, mousemouse

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clhc1Q5M6W3 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clhc1Q5M6W3 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Clhc1Q5M6W3 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clhc1Q5M6W3 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clhc1Q5M6W3 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clhc1Q5M6W3 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clhc1Q5M6W3 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clhc1Q5M6W3 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC18.54■□□□□ 0.56
Clhc1Q5M6W3 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clhc1Q5M6W3 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Clhc1Q5M6W3 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clhc1Q5M6W3 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clhc1Q5M6W3 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clhc1Q5M6W3 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clhc1Q5M6W3 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Clhc1Q5M6W3 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.52■□□□□ 0.56
Clhc1Q5M6W3 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Clhc1Q5M6W3 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clhc1Q5M6W3 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clhc1Q5M6W3 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clhc1Q5M6W3 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clhc1Q5M6W3 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Clhc1Q5M6W3 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Clhc1Q5M6W3 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.55
Clhc1Q5M6W3 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Clhc1Q5M6W3 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Clhc1Q5M6W3 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.5■□□□□ 0.55
Clhc1Q5M6W3 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.49■□□□□ 0.55
Clhc1Q5M6W3 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Clhc1Q5M6W3 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Clhc1Q5M6W3 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Clhc1Q5M6W3 Gm22238-201ENSMUST00000175222 88 ntBASIC18.48■□□□□ 0.55
Clhc1Q5M6W3 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Clhc1Q5M6W3 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms