Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msx3P70354 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msx3P70354 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.8■□□□□ 0.76
Msx3P70354 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msx3P70354 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msx3P70354 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msx3P70354 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Msx3P70354 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.8■□□□□ 0.76
Msx3P70354 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msx3P70354 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Msx3P70354 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Msx3P70354 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
Msx3P70354 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Msx3P70354 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
Msx3P70354 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC19.78■□□□□ 0.76
Msx3P70354 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Msx3P70354 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.78■□□□□ 0.76
Msx3P70354 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Msx3P70354 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.77■□□□□ 0.76
Msx3P70354 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 Gm12821-201ENSMUST00000120022 600 ntBASIC19.77■□□□□ 0.76
Msx3P70354 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 Mir7075-201ENSMUST00000184187 82 ntBASIC19.77■□□□□ 0.76
Msx3P70354 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.77■□□□□ 0.76
Msx3P70354 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Msx3P70354 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC19.77■□□□□ 0.76
Msx3P70354 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Msx3P70354 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Msx3P70354 AC165080.2-201ENSMUST00000217491 1530 ntBASIC19.76■□□□□ 0.75
Msx3P70354 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx3P70354 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx3P70354 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
Msx3P70354 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx3P70354 Wdr70-203ENSMUST00000227371 1130 ntBASIC19.76■□□□□ 0.75
Msx3P70354 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx3P70354 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx3P70354 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx3P70354 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx3P70354 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Msx3P70354 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Msx3P70354 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Msx3P70354 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Msx3P70354 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Msx3P70354 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Msx3P70354 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Msx3P70354 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Msx3P70354 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Msx3P70354 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Msx3P70354 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Msx3P70354 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Msx3P70354 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx3P70354 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx3P70354 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx3P70354 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx3P70354 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx3P70354 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx3P70354 AC137127.1-201ENSMUST00000213466 1078 ntBASIC19.74■□□□□ 0.75
Msx3P70354 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.74■□□□□ 0.75
Msx3P70354 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx3P70354 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Msx3P70354 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx3P70354 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Msx3P70354 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msx3P70354 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Msx3P70354 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Msx3P70354 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Msx3P70354 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msx3P70354 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC19.73■□□□□ 0.75
Msx3P70354 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Msx3P70354 Smad6-203ENSMUST00000179458 273 ntBASIC19.73■□□□□ 0.75
Msx3P70354 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Msx3P70354 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
Msx3P70354 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msx3P70354 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msx3P70354 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msx3P70354 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Msx3P70354 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msx3P70354 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Msx3P70354 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.72■□□□□ 0.75
Msx3P70354 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Msx3P70354 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Msx3P70354 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms