Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sox1P53783 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sox1P53783 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
Sox1P53783 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Sox1P53783 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sox1P53783 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Sox1P53783 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Sox1P53783 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sox1P53783 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sox1P53783 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sox1P53783 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Sox1P53783 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Sox1P53783 Gm25925-201ENSMUST00000158314 306 ntBASIC19.86■□□□□ 0.77
Sox1P53783 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
Sox1P53783 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Sox1P53783 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC19.86■□□□□ 0.77
Sox1P53783 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Sox1P53783 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Sox1P53783 Gm6659-201ENSMUST00000174752 547 ntBASIC19.85■□□□□ 0.77
Sox1P53783 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.85■□□□□ 0.77
Sox1P53783 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Sox1P53783 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Sox1P53783 Gm8668-201ENSMUST00000120559 1447 ntBASIC19.85■□□□□ 0.77
Sox1P53783 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Sox1P53783 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sox1P53783 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
Sox1P53783 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Sox1P53783 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.84■□□□□ 0.77
Sox1P53783 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Sox1P53783 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Sox1P53783 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Sox1P53783 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Sox1P53783 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Sox1P53783 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Sox1P53783 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Sox1P53783 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Sox1P53783 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Sox1P53783 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.83■□□□□ 0.76
Sox1P53783 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Sox1P53783 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC19.82■□□□□ 0.76
Sox1P53783 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Sox1P53783 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sox1P53783 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.82■□□□□ 0.76
Sox1P53783 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.82■□□□□ 0.76
Sox1P53783 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.82■□□□□ 0.76
Sox1P53783 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Sox1P53783 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Sox1P53783 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
Sox1P53783 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
Sox1P53783 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Sox1P53783 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.81■□□□□ 0.76
Sox1P53783 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Sox1P53783 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Sox1P53783 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sox1P53783 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
Sox1P53783 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sox1P53783 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sox1P53783 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Sox1P53783 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Sox1P53783 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Sox1P53783 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.8■□□□□ 0.76
Sox1P53783 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Sox1P53783 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Sox1P53783 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.8■□□□□ 0.76
Sox1P53783 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Sox1P53783 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
Sox1P53783 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC19.8■□□□□ 0.76
Sox1P53783 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Sox1P53783 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
Sox1P53783 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Sox1P53783 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Sox1P53783 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sox1P53783 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Sox1P53783 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Sox1P53783 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sox1P53783 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.79■□□□□ 0.76
Sox1P53783 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sox1P53783 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sox1P53783 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.79■□□□□ 0.76
Sox1P53783 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.79■□□□□ 0.76
Sox1P53783 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sox1P53783 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sox1P53783 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Sox1P53783 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Sox1P53783 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.78■□□□□ 0.76
Sox1P53783 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC19.78■□□□□ 0.76
Sox1P53783 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sox1P53783 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sox1P53783 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sox1P53783 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sox1P53783 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Sox1P53783 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sox1P53783 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC19.77■□□□□ 0.76
Sox1P53783 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC19.77■□□□□ 0.76
Sox1P53783 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sox1P53783 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sox1P53783 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Sox1P53783 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Sox1P53783 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Sox1P53783 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms