Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 Gm7417-201ENSMUST00000192950 473 ntBASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdh1F7BJK1 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.33■□□□□ 0.37
Pcdh1F7BJK1 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.33■□□□□ 0.37
Pcdh1F7BJK1 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Pcdh1F7BJK1 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Pcdh1F7BJK1 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Pcdh1F7BJK1 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Pcdh1F7BJK1 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.33■□□□□ 0.37
Pcdh1F7BJK1 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Pcdh1F7BJK1 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdh1F7BJK1 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Pcdh1F7BJK1 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.31■□□□□ 0.36
Pcdh1F7BJK1 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Pcdh1F7BJK1 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Pcdh1F7BJK1 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Pcdh1F7BJK1 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Pcdh1F7BJK1 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Pcdh1F7BJK1 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Pcdh1F7BJK1 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Pcdh1F7BJK1 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Pcdh1F7BJK1 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 AC093043.1-201ENSMUST00000226700 898 ntBASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Pcdh1F7BJK1 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Pcdh1F7BJK1 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Pcdh1F7BJK1 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
Pcdh1F7BJK1 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Pcdh1F7BJK1 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Pcdh1F7BJK1 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms