Protein–RNA interactions for Protein: Q8CDY9

Pcdhb7, Protocadherin beta 7, mousemouse

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb7Q8CDY9 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Pcdhb7Q8CDY9 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Pcdhb7Q8CDY9 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Pcdhb7Q8CDY9 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
Pcdhb7Q8CDY9 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Pcdhb7Q8CDY9 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Pcdhb7Q8CDY9 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Pcdhb7Q8CDY9 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Pcdhb7Q8CDY9 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Pcdhb7Q8CDY9 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC19.34■□□□□ 0.69
Pcdhb7Q8CDY9 Gm5576-201ENSMUST00000075809 1236 ntBASIC19.34■□□□□ 0.69
Pcdhb7Q8CDY9 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Pcdhb7Q8CDY9 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Pcdhb7Q8CDY9 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Pcdhb7Q8CDY9 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Pcdhb7Q8CDY9 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.33■□□□□ 0.69
Pcdhb7Q8CDY9 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Pcdhb7Q8CDY9 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Pcdhb7Q8CDY9 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Gm21956-201ENSMUST00000179946 522 ntBASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Pcdhb7Q8CDY9 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Pcdhb7Q8CDY9 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Gm43137-201ENSMUST00000198052 594 ntBASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Gm10209-201ENSMUST00000203397 1607 ntBASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Pcdhb7Q8CDY9 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Pcdhb7Q8CDY9 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Pcdhb7Q8CDY9 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Pcdhb7Q8CDY9 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Pcdhb7Q8CDY9 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Pcdhb7Q8CDY9 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms