Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Gm43403-201ENSMUST00000198011 1786 ntBASIC19.5■□□□□ 0.71
Col12a1Q60847 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col12a1Q60847 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col12a1Q60847 Mir1199-201ENSMUST00000117015 119 ntBASIC19.5■□□□□ 0.71
Col12a1Q60847 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
Col12a1Q60847 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.5■□□□□ 0.71
Col12a1Q60847 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Col12a1Q60847 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col12a1Q60847 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
Col12a1Q60847 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.49■□□□□ 0.71
Col12a1Q60847 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col12a1Q60847 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col12a1Q60847 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.49■□□□□ 0.71
Col12a1Q60847 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Col12a1Q60847 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Col12a1Q60847 Dio3-201ENSMUST00000097228 1449 ntBASIC19.49■□□□□ 0.71
Col12a1Q60847 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col12a1Q60847 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col12a1Q60847 Mir6236-201ENSMUST00000184437 123 ntBASIC19.49■□□□□ 0.71
Col12a1Q60847 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col12a1Q60847 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col12a1Q60847 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col12a1Q60847 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC19.48■□□□□ 0.71
Col12a1Q60847 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Col12a1Q60847 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.48■□□□□ 0.71
Col12a1Q60847 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col12a1Q60847 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col12a1Q60847 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col12a1Q60847 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col12a1Q60847 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Col12a1Q60847 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col12a1Q60847 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col12a1Q60847 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col12a1Q60847 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col12a1Q60847 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col12a1Q60847 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col12a1Q60847 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col12a1Q60847 Gm10517-202ENSMUST00000192970 758 ntBASIC19.47■□□□□ 0.71
Col12a1Q60847 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col12a1Q60847 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Col12a1Q60847 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col12a1Q60847 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col12a1Q60847 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC19.46■□□□□ 0.71
Col12a1Q60847 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col12a1Q60847 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
Col12a1Q60847 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.46■□□□□ 0.71
Col12a1Q60847 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Col12a1Q60847 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.45■□□□□ 0.7
Col12a1Q60847 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Gm42911-201ENSMUST00000199360 1630 ntBASIC19.45■□□□□ 0.7
Col12a1Q60847 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Mir5122-201ENSMUST00000175004 89 ntBASIC19.45■□□□□ 0.7
Col12a1Q60847 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col12a1Q60847 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col12a1Q60847 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Col12a1Q60847 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col12a1Q60847 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC19.44■□□□□ 0.7
Col12a1Q60847 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Col12a1Q60847 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col12a1Q60847 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Col12a1Q60847 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.44■□□□□ 0.7
Col12a1Q60847 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col12a1Q60847 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col12a1Q60847 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col12a1Q60847 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col12a1Q60847 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.43■□□□□ 0.7
Col12a1Q60847 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col12a1Q60847 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Col12a1Q60847 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col12a1Q60847 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC19.42■□□□□ 0.7
Col12a1Q60847 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.42■□□□□ 0.7
Col12a1Q60847 Gm2559-201ENSMUST00000201323 363 ntBASIC19.42■□□□□ 0.7
Col12a1Q60847 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.42■□□□□ 0.7
Col12a1Q60847 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col12a1Q60847 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col12a1Q60847 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.41■□□□□ 0.7
Col12a1Q60847 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col12a1Q60847 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col12a1Q60847 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col12a1Q60847 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col12a1Q60847 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col12a1Q60847 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms