Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clk3O35492 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Clk3O35492 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Clk3O35492 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.34■□□□□ 0.53
Clk3O35492 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Clk3O35492 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clk3O35492 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Clk3O35492 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clk3O35492 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clk3O35492 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clk3O35492 Golph3-205ENSMUST00000228671 2842 ntBASIC18.34■□□□□ 0.53
Clk3O35492 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC18.34■□□□□ 0.53
Clk3O35492 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Clk3O35492 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Clk3O35492 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.33■□□□□ 0.53
Clk3O35492 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC18.33■□□□□ 0.53
Clk3O35492 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Clk3O35492 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Clk3O35492 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Clk3O35492 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Clk3O35492 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Clk3O35492 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Clk3O35492 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Clk3O35492 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Clk3O35492 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clk3O35492 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clk3O35492 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clk3O35492 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.32■□□□□ 0.52
Clk3O35492 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clk3O35492 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clk3O35492 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clk3O35492 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clk3O35492 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.32■□□□□ 0.52
Clk3O35492 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clk3O35492 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clk3O35492 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clk3O35492 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Clk3O35492 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Clk3O35492 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Clk3O35492 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Clk3O35492 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Clk3O35492 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Clk3O35492 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Clk3O35492 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Clk3O35492 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Clk3O35492 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.31■□□□□ 0.52
Clk3O35492 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Clk3O35492 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Clk3O35492 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Clk3O35492 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Clk3O35492 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.3■□□□□ 0.52
Clk3O35492 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
Clk3O35492 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clk3O35492 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
Clk3O35492 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Clk3O35492 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.29■□□□□ 0.52
Clk3O35492 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC18.29■□□□□ 0.52
Clk3O35492 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Clk3O35492 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
Clk3O35492 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clk3O35492 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Clk3O35492 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms