Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col6a4A2AX52 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col6a4A2AX52 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col6a4A2AX52 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col6a4A2AX52 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Col6a4A2AX52 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Col6a4A2AX52 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Gm44878-201ENSMUST00000205812 1295 ntBASIC16.34■□□□□ 0.21
Col6a4A2AX52 Gm44672-201ENSMUST00000206944 1098 ntBASIC16.34■□□□□ 0.21
Col6a4A2AX52 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Col6a4A2AX52 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Col6a4A2AX52 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col6a4A2AX52 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col6a4A2AX52 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Col6a4A2AX52 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Col6a4A2AX52 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Col6a4A2AX52 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a4A2AX52 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a4A2AX52 Mir6236-201ENSMUST00000184437 123 ntBASIC16.33■□□□□ 0.2
Col6a4A2AX52 AC122769.4-201ENSMUST00000228166 901 ntBASIC16.33■□□□□ 0.2
Col6a4A2AX52 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a4A2AX52 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a4A2AX52 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a4A2AX52 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a4A2AX52 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a4A2AX52 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a4A2AX52 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a4A2AX52 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col6a4A2AX52 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Gm26524-201ENSMUST00000192339 390 ntBASIC16.32■□□□□ 0.2
Col6a4A2AX52 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col6a4A2AX52 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col6a4A2AX52 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Gm38205-201ENSMUST00000192243 258 ntBASIC16.3■□□□□ 0.2
Col6a4A2AX52 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.3■□□□□ 0.2
Col6a4A2AX52 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Col6a4A2AX52 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col6a4A2AX52 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC16.29■□□□□ 0.2
Col6a4A2AX52 CT010467.1-202ENSMUST00000205406 714 ntBASIC16.29■□□□□ 0.2
Col6a4A2AX52 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col6a4A2AX52 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col6a4A2AX52 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col6a4A2AX52 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col6a4A2AX52 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col6a4A2AX52 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Col6a4A2AX52 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col6a4A2AX52 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col6a4A2AX52 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col6a4A2AX52 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col6a4A2AX52 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col6a4A2AX52 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col6a4A2AX52 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col6a4A2AX52 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms