Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Gm43060-201ENSMUST00000200621 289 ntBASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Cdc40Q9DC48 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18■□□□□ 0.47
Cdc40Q9DC48 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 Gm34220-201ENSMUST00000223001 2709 ntBASIC18■□□□□ 0.47
Cdc40Q9DC48 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC18■□□□□ 0.47
Cdc40Q9DC48 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cdc40Q9DC48 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Gm5297-201ENSMUST00000198555 1171 ntBASIC17.99■□□□□ 0.47
Cdc40Q9DC48 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cdc40Q9DC48 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cdc40Q9DC48 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Gm27045-201ENSMUST00000182145 1402 ntBASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cdc40Q9DC48 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cdc40Q9DC48 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC17.96■□□□□ 0.46
Cdc40Q9DC48 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC17.95■□□□□ 0.46
Cdc40Q9DC48 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdc40Q9DC48 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdc40Q9DC48 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC17.95■□□□□ 0.46
Cdc40Q9DC48 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdc40Q9DC48 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC17.95■□□□□ 0.46
Cdc40Q9DC48 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Cdc40Q9DC48 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cdc40Q9DC48 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cdc40Q9DC48 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.95■□□□□ 0.46
Cdc40Q9DC48 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC17.94■□□□□ 0.46
Cdc40Q9DC48 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms