Protein–RNA interactions for Protein: Q8VIG6

Traip, E3 ubiquitin-protein ligase TRAIP, mousemouse

Predictions only

Length 470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TraipQ8VIG6 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TraipQ8VIG6 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.78■□□□□ 0.92
TraipQ8VIG6 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
TraipQ8VIG6 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
TraipQ8VIG6 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TraipQ8VIG6 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TraipQ8VIG6 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TraipQ8VIG6 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TraipQ8VIG6 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TraipQ8VIG6 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
TraipQ8VIG6 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TraipQ8VIG6 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TraipQ8VIG6 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TraipQ8VIG6 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TraipQ8VIG6 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.77■□□□□ 0.92
TraipQ8VIG6 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.77■□□□□ 0.92
TraipQ8VIG6 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TraipQ8VIG6 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TraipQ8VIG6 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TraipQ8VIG6 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
TraipQ8VIG6 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TraipQ8VIG6 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TraipQ8VIG6 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TraipQ8VIG6 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TraipQ8VIG6 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
TraipQ8VIG6 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TraipQ8VIG6 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TraipQ8VIG6 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TraipQ8VIG6 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TraipQ8VIG6 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
TraipQ8VIG6 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
TraipQ8VIG6 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TraipQ8VIG6 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Gm13534-201ENSMUST00000121169 513 ntBASIC20.75■□□□□ 0.91
TraipQ8VIG6 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TraipQ8VIG6 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TraipQ8VIG6 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TraipQ8VIG6 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
TraipQ8VIG6 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
TraipQ8VIG6 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TraipQ8VIG6 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TraipQ8VIG6 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TraipQ8VIG6 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TraipQ8VIG6 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TraipQ8VIG6 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TraipQ8VIG6 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TraipQ8VIG6 Gm38205-201ENSMUST00000192243 258 ntBASIC20.73■□□□□ 0.91
TraipQ8VIG6 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.73■□□□□ 0.91
TraipQ8VIG6 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
TraipQ8VIG6 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TraipQ8VIG6 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
TraipQ8VIG6 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
TraipQ8VIG6 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
TraipQ8VIG6 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
TraipQ8VIG6 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TraipQ8VIG6 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TraipQ8VIG6 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.72■□□□□ 0.91
TraipQ8VIG6 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TraipQ8VIG6 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.72■□□□□ 0.91
TraipQ8VIG6 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TraipQ8VIG6 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.71■□□□□ 0.91
TraipQ8VIG6 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
TraipQ8VIG6 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TraipQ8VIG6 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TraipQ8VIG6 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TraipQ8VIG6 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TraipQ8VIG6 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TraipQ8VIG6 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
TraipQ8VIG6 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.7■□□□□ 0.9
TraipQ8VIG6 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TraipQ8VIG6 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TraipQ8VIG6 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.7■□□□□ 0.9
TraipQ8VIG6 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TraipQ8VIG6 Gm10602-201ENSMUST00000098239 609 ntBASIC20.7■□□□□ 0.9
TraipQ8VIG6 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.7■□□□□ 0.9
TraipQ8VIG6 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TraipQ8VIG6 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TraipQ8VIG6 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
TraipQ8VIG6 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.7■□□□□ 0.9
TraipQ8VIG6 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TraipQ8VIG6 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TraipQ8VIG6 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TraipQ8VIG6 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TraipQ8VIG6 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TraipQ8VIG6 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TraipQ8VIG6 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.69■□□□□ 0.9
TraipQ8VIG6 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC20.69■□□□□ 0.9
TraipQ8VIG6 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
TraipQ8VIG6 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TraipQ8VIG6 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms