Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav8d-2Q5R1B6 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
Trav8d-2Q5R1B6 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav8d-2Q5R1B6 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav8d-2Q5R1B6 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav8d-2Q5R1B6 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Trav8d-2Q5R1B6 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Trav8d-2Q5R1B6 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav8d-2Q5R1B6 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trav8d-2Q5R1B6 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.64
Trav8d-2Q5R1B6 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.08■□□□□ 0.64
Trav8d-2Q5R1B6 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Trav8d-2Q5R1B6 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
Trav8d-2Q5R1B6 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav8d-2Q5R1B6 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Trav8d-2Q5R1B6 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav8d-2Q5R1B6 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trav8d-2Q5R1B6 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 AA386476-201ENSMUST00000098781 1665 ntBASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav8d-2Q5R1B6 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav8d-2Q5R1B6 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trav8d-2Q5R1B6 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trav8d-2Q5R1B6 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav8d-2Q5R1B6 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trav8d-2Q5R1B6 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Trav8d-2Q5R1B6 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav8d-2Q5R1B6 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
Trav8d-2Q5R1B6 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.04■□□□□ 0.64
Trav8d-2Q5R1B6 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav8d-2Q5R1B6 AC135963.1-201ENSMUST00000211640 717 ntBASIC19.04■□□□□ 0.64
Trav8d-2Q5R1B6 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav8d-2Q5R1B6 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav8d-2Q5R1B6 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trav8d-2Q5R1B6 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav8d-2Q5R1B6 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Trav8d-2Q5R1B6 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms