Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Ddb1Q3U1J4 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Ddb1Q3U1J4 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Ddb1Q3U1J4 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
Ddb1Q3U1J4 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Ddb1Q3U1J4 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC25.01■■□□□ 1.59
Ddb1Q3U1J4 Gm6576-201ENSMUST00000169678 883 ntBASIC25.01■■□□□ 1.59
Ddb1Q3U1J4 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Ddb1Q3U1J4 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Ddb1Q3U1J4 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Ddb1Q3U1J4 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Ddb1Q3U1J4 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Ddb1Q3U1J4 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Ddb1Q3U1J4 Gm12896-201ENSMUST00000118430 226 ntBASIC25■■□□□ 1.59
Ddb1Q3U1J4 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC25■■□□□ 1.59
Ddb1Q3U1J4 Gm29994-201ENSMUST00000195495 1193 ntBASIC25■■□□□ 1.59
Ddb1Q3U1J4 Arhgef33-211ENSMUST00000225658 473 ntBASIC25■■□□□ 1.59
Ddb1Q3U1J4 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Ddb1Q3U1J4 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC25■■□□□ 1.59
Ddb1Q3U1J4 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC25■■□□□ 1.59
Ddb1Q3U1J4 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC25■■□□□ 1.59
Ddb1Q3U1J4 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC25■■□□□ 1.59
Ddb1Q3U1J4 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC25■■□□□ 1.59
Ddb1Q3U1J4 Gm5643-201ENSMUST00000117081 966 ntBASIC24.99■■□□□ 1.59
Ddb1Q3U1J4 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Ddb1Q3U1J4 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
Ddb1Q3U1J4 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
Ddb1Q3U1J4 AC154266.1-201ENSMUST00000223190 503 ntBASIC24.99■■□□□ 1.59
Ddb1Q3U1J4 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Ddb1Q3U1J4 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Ddb1Q3U1J4 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Ddb1Q3U1J4 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Ddb1Q3U1J4 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
Ddb1Q3U1J4 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Ddb1Q3U1J4 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
Ddb1Q3U1J4 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC24.98■■□□□ 1.59
Ddb1Q3U1J4 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
Ddb1Q3U1J4 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Ddb1Q3U1J4 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
Ddb1Q3U1J4 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC24.97■■□□□ 1.59
Ddb1Q3U1J4 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
Ddb1Q3U1J4 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Ddb1Q3U1J4 AC131586.2-201ENSMUST00000228370 1512 ntBASIC24.96■■□□□ 1.59
Ddb1Q3U1J4 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Ddb1Q3U1J4 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Ddb1Q3U1J4 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Ddb1Q3U1J4 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
Ddb1Q3U1J4 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC24.96■■□□□ 1.59
Ddb1Q3U1J4 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Ddb1Q3U1J4 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Ddb1Q3U1J4 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC24.96■■□□□ 1.59
Ddb1Q3U1J4 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Ddb1Q3U1J4 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.58
Ddb1Q3U1J4 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Ddb1Q3U1J4 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Krtap5-1-202ENSMUST00000188274 742 ntBASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
Ddb1Q3U1J4 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Ddb1Q3U1J4 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Ddb1Q3U1J4 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC24.92■■□□□ 1.58
Ddb1Q3U1J4 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
Ddb1Q3U1J4 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Ddb1Q3U1J4 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
Ddb1Q3U1J4 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Ddb1Q3U1J4 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Ddb1Q3U1J4 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
Ddb1Q3U1J4 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Ddb1Q3U1J4 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
Ddb1Q3U1J4 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
Ddb1Q3U1J4 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Ddb1Q3U1J4 Gm13509-201ENSMUST00000119733 1308 ntBASIC24.9■■□□□ 1.58
Ddb1Q3U1J4 AL672049.1-201ENSMUST00000197943 91 ntBASIC24.9■■□□□ 1.58
Ddb1Q3U1J4 AA386476-201ENSMUST00000098781 1665 ntBASIC24.9■■□□□ 1.58
Ddb1Q3U1J4 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Ddb1Q3U1J4 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC24.89■■□□□ 1.58
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms