Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.73■□□□□ 0.59
Lsm1Q8VC85 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lsm1Q8VC85 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.73■□□□□ 0.59
Lsm1Q8VC85 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lsm1Q8VC85 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Lsm1Q8VC85 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Lsm1Q8VC85 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC18.71■□□□□ 0.59
Lsm1Q8VC85 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lsm1Q8VC85 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.7■□□□□ 0.58
Lsm1Q8VC85 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Lsm1Q8VC85 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lsm1Q8VC85 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Lsm1Q8VC85 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC18.7■□□□□ 0.58
Lsm1Q8VC85 Rps24-207ENSMUST00000224568 714 ntBASIC18.7■□□□□ 0.58
Lsm1Q8VC85 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lsm1Q8VC85 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lsm1Q8VC85 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Lsm1Q8VC85 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Lsm1Q8VC85 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Lsm1Q8VC85 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Lsm1Q8VC85 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lsm1Q8VC85 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Lsm1Q8VC85 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Lsm1Q8VC85 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lsm1Q8VC85 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lsm1Q8VC85 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lsm1Q8VC85 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lsm1Q8VC85 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lsm1Q8VC85 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.68■□□□□ 0.58
Lsm1Q8VC85 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.68■□□□□ 0.58
Lsm1Q8VC85 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lsm1Q8VC85 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lsm1Q8VC85 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lsm1Q8VC85 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lsm1Q8VC85 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC18.67■□□□□ 0.58
Lsm1Q8VC85 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lsm1Q8VC85 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lsm1Q8VC85 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
Lsm1Q8VC85 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Lsm1Q8VC85 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Lsm1Q8VC85 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lsm1Q8VC85 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lsm1Q8VC85 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.66■□□□□ 0.58
Lsm1Q8VC85 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lsm1Q8VC85 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Lsm1Q8VC85 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lsm1Q8VC85 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lsm1Q8VC85 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lsm1Q8VC85 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lsm1Q8VC85 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lsm1Q8VC85 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Lsm1Q8VC85 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lsm1Q8VC85 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lsm1Q8VC85 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Lsm1Q8VC85 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lsm1Q8VC85 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Lsm1Q8VC85 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lsm1Q8VC85 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.64■□□□□ 0.57
Lsm1Q8VC85 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Lsm1Q8VC85 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Lsm1Q8VC85 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lsm1Q8VC85 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lsm1Q8VC85 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
Lsm1Q8VC85 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lsm1Q8VC85 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.63■□□□□ 0.57
Lsm1Q8VC85 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lsm1Q8VC85 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.63■□□□□ 0.57
Lsm1Q8VC85 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms