Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ccdc28aQ8CEI3 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ccdc28aQ8CEI3 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
Ccdc28aQ8CEI3 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ccdc28aQ8CEI3 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Ccdc28aQ8CEI3 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc28aQ8CEI3 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ccdc28aQ8CEI3 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ccdc28aQ8CEI3 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Etf1-202ENSMUST00000180351 108 ntBASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.55■□□□□ 0.88
Ccdc28aQ8CEI3 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ccdc28aQ8CEI3 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ccdc28aQ8CEI3 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ccdc28aQ8CEI3 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Ccdc28aQ8CEI3 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ccdc28aQ8CEI3 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms