Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Ift88Q61371 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Ift88Q61371 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ift88Q61371 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ift88Q61371 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Ift88Q61371 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Ift88Q61371 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Ift88Q61371 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.59■■□□□ 1.05
Ift88Q61371 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
Ift88Q61371 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ift88Q61371 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ift88Q61371 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ift88Q61371 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ift88Q61371 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.58■■□□□ 1.05
Ift88Q61371 Gm5812-201ENSMUST00000061073 957 ntBASIC21.58■■□□□ 1.05
Ift88Q61371 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ift88Q61371 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Ift88Q61371 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.58■■□□□ 1.04
Ift88Q61371 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Ift88Q61371 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.58■■□□□ 1.04
Ift88Q61371 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ift88Q61371 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Ift88Q61371 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC21.57■■□□□ 1.04
Ift88Q61371 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Ift88Q61371 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ift88Q61371 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.57■■□□□ 1.04
Ift88Q61371 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ift88Q61371 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ift88Q61371 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC21.57■■□□□ 1.04
Ift88Q61371 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ift88Q61371 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Ift88Q61371 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.56■■□□□ 1.04
Ift88Q61371 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Ift88Q61371 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.55■■□□□ 1.04
Ift88Q61371 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC21.55■■□□□ 1.04
Ift88Q61371 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
Ift88Q61371 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ift88Q61371 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ift88Q61371 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ift88Q61371 Gm5112-201ENSMUST00000204407 2368 ntBASIC21.55■■□□□ 1.04
Ift88Q61371 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Ift88Q61371 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ift88Q61371 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Ift88Q61371 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ift88Q61371 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ift88Q61371 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ift88Q61371 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Ift88Q61371 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ift88Q61371 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.54■■□□□ 1.04
Ift88Q61371 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.54■■□□□ 1.04
Ift88Q61371 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ift88Q61371 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ift88Q61371 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ift88Q61371 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ift88Q61371 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ift88Q61371 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Ift88Q61371 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.54■■□□□ 1.04
Ift88Q61371 AA386476-201ENSMUST00000098781 1665 ntBASIC21.53■■□□□ 1.04
Ift88Q61371 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ift88Q61371 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ift88Q61371 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.53■■□□□ 1.04
Ift88Q61371 Gm15546-201ENSMUST00000122095 826 ntBASIC21.53■■□□□ 1.04
Ift88Q61371 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Ift88Q61371 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.53■■□□□ 1.04
Ift88Q61371 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ift88Q61371 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ift88Q61371 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ift88Q61371 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ift88Q61371 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ift88Q61371 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ift88Q61371 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ift88Q61371 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ift88Q61371 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ift88Q61371 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ift88Q61371 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ift88Q61371 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ift88Q61371 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Ift88Q61371 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.51■■□□□ 1.03
Ift88Q61371 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ift88Q61371 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC21.51■■□□□ 1.03
Ift88Q61371 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ift88Q61371 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ift88Q61371 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Ift88Q61371 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ift88Q61371 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ift88Q61371 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ift88Q61371 Gm22238-201ENSMUST00000175222 88 ntBASIC21.5■■□□□ 1.03
Ift88Q61371 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms