Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox1P53783 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Sox1P53783 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sox1P53783 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Sox1P53783 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sox1P53783 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.14■□□□□ 0.81
Sox1P53783 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sox1P53783 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
Sox1P53783 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
Sox1P53783 Gm20472-201ENSMUST00000174403 1240 ntBASIC20.14■□□□□ 0.81
Sox1P53783 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Sox1P53783 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC20.14■□□□□ 0.81
Sox1P53783 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Sox1P53783 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.14■□□□□ 0.81
Sox1P53783 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.14■□□□□ 0.81
Sox1P53783 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sox1P53783 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sox1P53783 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Sox1P53783 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sox1P53783 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sox1P53783 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sox1P53783 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.13■□□□□ 0.81
Sox1P53783 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Sox1P53783 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sox1P53783 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Sox1P53783 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC20.12■□□□□ 0.81
Sox1P53783 Gm10698-201ENSMUST00000182663 604 ntBASIC20.12■□□□□ 0.81
Sox1P53783 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Sox1P53783 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sox1P53783 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sox1P53783 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.12■□□□□ 0.81
Sox1P53783 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Sox1P53783 AC115037.1-201ENSMUST00000223391 2173 ntBASIC20.11■□□□□ 0.81
Sox1P53783 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox1P53783 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox1P53783 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox1P53783 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC20.11■□□□□ 0.81
Sox1P53783 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox1P53783 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox1P53783 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Sox1P53783 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox1P53783 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Sox1P53783 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sox1P53783 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Sox1P53783 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sox1P53783 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC20.1■□□□□ 0.81
Sox1P53783 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC20.1■□□□□ 0.81
Sox1P53783 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.1■□□□□ 0.81
Sox1P53783 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Sox1P53783 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sox1P53783 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Sox1P53783 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sox1P53783 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sox1P53783 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.09■□□□□ 0.81
Sox1P53783 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sox1P53783 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sox1P53783 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Sox1P53783 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sox1P53783 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sox1P53783 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.09■□□□□ 0.81
Sox1P53783 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sox1P53783 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC20.09■□□□□ 0.81
Sox1P53783 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sox1P53783 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Sox1P53783 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Sox1P53783 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Sox1P53783 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sox1P53783 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Sox1P53783 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Sox1P53783 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Sox1P53783 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Sox1P53783 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sox1P53783 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sox1P53783 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sox1P53783 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sox1P53783 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sox1P53783 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Sox1P53783 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Sox1P53783 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Sox1P53783 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sox1P53783 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Sox1P53783 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sox1P53783 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sox1P53783 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sox1P53783 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC20.06■□□□□ 0.8
Sox1P53783 Gm11249-201ENSMUST00000117071 859 ntBASIC20.06■□□□□ 0.8
Sox1P53783 Gm6433-201ENSMUST00000118634 875 ntBASIC20.06■□□□□ 0.8
Sox1P53783 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Sox1P53783 Gm43799-201ENSMUST00000201845 579 ntBASIC20.06■□□□□ 0.8
Sox1P53783 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sox1P53783 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sox1P53783 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sox1P53783 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.06■□□□□ 0.8
Sox1P53783 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sox1P53783 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sox1P53783 Mir6236-201ENSMUST00000184437 123 ntBASIC20.05■□□□□ 0.8
Sox1P53783 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Sox1P53783 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sox1P53783 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sox1P53783 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms