Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Col6a3E9PWQ3 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col6a3E9PWQ3 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col6a3E9PWQ3 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col6a3E9PWQ3 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col6a3E9PWQ3 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Col6a3E9PWQ3 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Col6a3E9PWQ3 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col6a3E9PWQ3 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a3E9PWQ3 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Col6a3E9PWQ3 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a3E9PWQ3 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a3E9PWQ3 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a3E9PWQ3 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a3E9PWQ3 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a3E9PWQ3 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.99■□□□□ 0.79
Col6a3E9PWQ3 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col6a3E9PWQ3 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Gm6345-202ENSMUST00000180900 204 ntBASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC19.98■□□□□ 0.79
Col6a3E9PWQ3 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a3E9PWQ3 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.97■□□□□ 0.79
Col6a3E9PWQ3 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.97■□□□□ 0.79
Col6a3E9PWQ3 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a3E9PWQ3 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a3E9PWQ3 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a3E9PWQ3 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC19.97■□□□□ 0.79
Col6a3E9PWQ3 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a3E9PWQ3 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col6a3E9PWQ3 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 Gm2559-201ENSMUST00000201323 363 ntBASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 Gm33142-201ENSMUST00000193913 867 ntBASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col6a3E9PWQ3 CT030146.1-201ENSMUST00000220919 217 ntBASIC19.95■□□□□ 0.78
Col6a3E9PWQ3 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a3E9PWQ3 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a3E9PWQ3 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a3E9PWQ3 Dio3-201ENSMUST00000097228 1449 ntBASIC19.95■□□□□ 0.78
Col6a3E9PWQ3 AC159205.3-201ENSMUST00000224614 874 ntBASIC19.95■□□□□ 0.78
Col6a3E9PWQ3 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a3E9PWQ3 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a3E9PWQ3 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col6a3E9PWQ3 Gm5417-201ENSMUST00000079706 384 ntBASIC19.94■□□□□ 0.78
Col6a3E9PWQ3 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.94■□□□□ 0.78
Col6a3E9PWQ3 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.94■□□□□ 0.78
Col6a3E9PWQ3 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.94■□□□□ 0.78
Col6a3E9PWQ3 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col6a3E9PWQ3 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col6a3E9PWQ3 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Col6a3E9PWQ3 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
Col6a3E9PWQ3 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Col6a3E9PWQ3 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col6a3E9PWQ3 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a3E9PWQ3 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a3E9PWQ3 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.93■□□□□ 0.78
Col6a3E9PWQ3 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a3E9PWQ3 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC19.93■□□□□ 0.78
Col6a3E9PWQ3 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a3E9PWQ3 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a3E9PWQ3 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a3E9PWQ3 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col6a3E9PWQ3 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col6a3E9PWQ3 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms