Protein–RNA interactions for Protein: Q9D0N7

Chaf1b, Chromatin assembly factor 1 subunit B, mousemouse

Predictions only

Length 572 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chaf1bQ9D0N7 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chaf1bQ9D0N7 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC18.41■□□□□ 0.54
Chaf1bQ9D0N7 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.4■□□□□ 0.54
Chaf1bQ9D0N7 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Chaf1bQ9D0N7 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Gm45444-201ENSMUST00000211394 898 ntBASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chaf1bQ9D0N7 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chaf1bQ9D0N7 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chaf1bQ9D0N7 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chaf1bQ9D0N7 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chaf1bQ9D0N7 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chaf1bQ9D0N7 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Chaf1bQ9D0N7 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chaf1bQ9D0N7 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chaf1bQ9D0N7 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chaf1bQ9D0N7 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chaf1bQ9D0N7 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Chaf1bQ9D0N7 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC18.36■□□□□ 0.53
Chaf1bQ9D0N7 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chaf1bQ9D0N7 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chaf1bQ9D0N7 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Chaf1bQ9D0N7 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Chaf1bQ9D0N7 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms