Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.88■□□□□ 0.93
Clp1Q99LI9 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Clp1Q99LI9 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clp1Q99LI9 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clp1Q99LI9 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clp1Q99LI9 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clp1Q99LI9 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Clp1Q99LI9 Gm38205-201ENSMUST00000192243 258 ntBASIC20.87■□□□□ 0.93
Clp1Q99LI9 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Clp1Q99LI9 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Clp1Q99LI9 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Clp1Q99LI9 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Clp1Q99LI9 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Clp1Q99LI9 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.86■□□□□ 0.93
Clp1Q99LI9 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.86■□□□□ 0.93
Clp1Q99LI9 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.86■□□□□ 0.93
Clp1Q99LI9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Clp1Q99LI9 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.86■□□□□ 0.93
Clp1Q99LI9 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.86■□□□□ 0.93
Clp1Q99LI9 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Clp1Q99LI9 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.86■□□□□ 0.93
Clp1Q99LI9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
Clp1Q99LI9 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Clp1Q99LI9 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clp1Q99LI9 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Clp1Q99LI9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clp1Q99LI9 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Clp1Q99LI9 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clp1Q99LI9 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
Clp1Q99LI9 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clp1Q99LI9 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clp1Q99LI9 Gm13534-201ENSMUST00000121169 513 ntBASIC20.85■□□□□ 0.93
Clp1Q99LI9 Gm5408-201ENSMUST00000197998 747 ntBASIC20.85■□□□□ 0.93
Clp1Q99LI9 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Clp1Q99LI9 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.85■□□□□ 0.93
Clp1Q99LI9 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clp1Q99LI9 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Clp1Q99LI9 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Clp1Q99LI9 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Clp1Q99LI9 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Clp1Q99LI9 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.84■□□□□ 0.93
Clp1Q99LI9 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.84■□□□□ 0.93
Clp1Q99LI9 Gm10252-201ENSMUST00000209541 832 ntBASIC20.84■□□□□ 0.93
Clp1Q99LI9 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Clp1Q99LI9 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
Clp1Q99LI9 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.83■□□□□ 0.93
Clp1Q99LI9 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Gm6420-201ENSMUST00000193885 723 ntBASIC20.83■□□□□ 0.93
Clp1Q99LI9 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Clp1Q99LI9 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.83■□□□□ 0.93
Clp1Q99LI9 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
Clp1Q99LI9 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Clp1Q99LI9 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Clp1Q99LI9 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clp1Q99LI9 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Clp1Q99LI9 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.82■□□□□ 0.92
Clp1Q99LI9 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clp1Q99LI9 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Clp1Q99LI9 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clp1Q99LI9 Gm20049-201ENSMUST00000219950 730 ntBASIC20.82■□□□□ 0.92
Clp1Q99LI9 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Clp1Q99LI9 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Clp1Q99LI9 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clp1Q99LI9 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Clp1Q99LI9 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Clp1Q99LI9 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Clp1Q99LI9 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clp1Q99LI9 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clp1Q99LI9 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Clp1Q99LI9 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Clp1Q99LI9 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.8■□□□□ 0.92
Clp1Q99LI9 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clp1Q99LI9 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clp1Q99LI9 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clp1Q99LI9 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Clp1Q99LI9 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Clp1Q99LI9 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.79■□□□□ 0.92
Clp1Q99LI9 Gm6211-202ENSMUST00000167849 925 ntBASIC20.79■□□□□ 0.92
Clp1Q99LI9 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms