Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shkbp1Q6P7W2 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.59■□□□□ 0.89
Shkbp1Q6P7W2 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shkbp1Q6P7W2 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shkbp1Q6P7W2 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shkbp1Q6P7W2 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shkbp1Q6P7W2 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shkbp1Q6P7W2 AC112142.1-201ENSMUST00000228796 918 ntBASIC20.58■□□□□ 0.89
Shkbp1Q6P7W2 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shkbp1Q6P7W2 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Shkbp1Q6P7W2 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Shkbp1Q6P7W2 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.57■□□□□ 0.88
Shkbp1Q6P7W2 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Shkbp1Q6P7W2 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Shkbp1Q6P7W2 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.57■□□□□ 0.88
Shkbp1Q6P7W2 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Shkbp1Q6P7W2 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Shkbp1Q6P7W2 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
Shkbp1Q6P7W2 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Shkbp1Q6P7W2 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.57■□□□□ 0.88
Shkbp1Q6P7W2 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Shkbp1Q6P7W2 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shkbp1Q6P7W2 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.55■□□□□ 0.88
Shkbp1Q6P7W2 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Shkbp1Q6P7W2 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Shkbp1Q6P7W2 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Shkbp1Q6P7W2 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shkbp1Q6P7W2 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shkbp1Q6P7W2 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shkbp1Q6P7W2 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shkbp1Q6P7W2 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Shkbp1Q6P7W2 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Shkbp1Q6P7W2 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Shkbp1Q6P7W2 AA386476-201ENSMUST00000098781 1665 ntBASIC20.52■□□□□ 0.88
Shkbp1Q6P7W2 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.52■□□□□ 0.88
Shkbp1Q6P7W2 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Shkbp1Q6P7W2 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.52■□□□□ 0.88
Shkbp1Q6P7W2 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Shkbp1Q6P7W2 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.87
Shkbp1Q6P7W2 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shkbp1Q6P7W2 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Shkbp1Q6P7W2 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.51■□□□□ 0.87
Shkbp1Q6P7W2 Gm38205-201ENSMUST00000192243 258 ntBASIC20.51■□□□□ 0.87
Shkbp1Q6P7W2 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Shkbp1Q6P7W2 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shkbp1Q6P7W2 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shkbp1Q6P7W2 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.51■□□□□ 0.87
Shkbp1Q6P7W2 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.51■□□□□ 0.87
Shkbp1Q6P7W2 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shkbp1Q6P7W2 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Gm13146-201ENSMUST00000118508 780 ntBASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Shkbp1Q6P7W2 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 93.6 ms